Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G21070 214 / 3e-67 FIO1 FIONA1, methyltransferases (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025061 [exp] 318 / 2e-106 AT2G21070 567 / 0.0 FIONA1, methyltransferases (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G172100 [exp] 355 / 5e-121 AT2G21070 595 / 0.0 FIONA1, methyltransferases (.1.2.3) Potri.009G131700 [exp] 253 / 1e-83 AT2G21070 387 / 7e-135 FIONA1, methyltransferases (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF05971 [flax] [poplar] Methyltransf_10 RNA methyltransferase
Representative CDS sequence Show only first row Show all	>Lus10034481 pacid=23176094 polypeptide=Lus10034481 locus=Lus10034481.g ID=Lus10034481.BGIv1.0 annot-version=v1.0 ATGCCAAGTAAGAAGAACAAGCGGAAGAGGCCAGAGCGGCCGACGATCCACCCGCGAAACAAGTACGCCGACAGTCCGCCGGACTTCGGTCGGTTGGCGT CTCTCTACCCTTCTTTCGAGCCCTTCGCTTTCTACTCCCGCGACGGCCACCCTAGAATTGACTGGACCGACTTCAACGCAACCAGGGAGCTCACCAAGGT CTTGCTCCTCCACGATCACAGCATCAATTGGCTGAGGTTTAGGGATACCGTTCCTAGGCATAATCACTCTGAGAGAAATGTCGGAAACAATCCAGAGGTT GCAGAACTCATTGAAATCAGAAAGGTTTCAGTCTGTGGAAGTGAGACACCCGATGTTGCAGATGCTCGGTATTGCGGTCCACCTATACTTCTTGGGCTAG TCAAAGAGGATGAAAAGTTTGATTTCCGCATGTGCAATCCTCCGTTCTTCGAGAGCATGGAGGAAGCAGGACTGAATCCAAAAACTGCTTGCGGTGGCAC TCTTGAGGAGATAGTTTGTCATGGTGGGGAACAAGCATTCGTTACTCTTATGATTGAAGATAGTGTTGTGTTGAACGATTCCTTTAGGTGGTATACTTCA ATGCTTGGGAGGAAGATAAACCTCAAATTTCTAAACTCAAAACTTCGCGAAGTGGGAGCAACTGTTGTGAAGACTACCGAGTTTGTGCAAGGTCAAACGT GTAGATGGGGCTTGGCTTGGTCTTTTCTACCTCCAGCTAGGAAGATCATACCAGCAGTTTCGGCGGTTGTGAGAACCAACATTAGTTTCATGCTTGAGTC TGTATTTACGGTGGGTATGGATAATAAGTCTTTACAGTCCGGCCGTCAAGGTTATTGGGTTTAA
AA sequence Show only first row Show all	>Lus10034481 pacid=23176094 polypeptide=Lus10034481 locus=Lus10034481.g ID=Lus10034481.BGIv1.0 annot-version=v1.0 MPSKKNKRKRPERPTIHPRNKYADSPPDFGRLASLYPSFEPFAFYSRDGHPRIDWTDFNATRELTKVLLLHDHSINWLRFRDTVPRHNHSERNVGNNPEV AELIEIRKVSVCGSETPDVADARYCGPPILLGLVKEDEKFDFRMCNPPFFESMEEAGLNPKTACGGTLEEIVCHGGEQAFVTLMIEDSVVLNDSFRWYTS MLGRKINLKFLNSKLREVGATVVKTTEFVQGQTCRWGLAWSFLPPARKIIPAVSAVVRTNISFMLESVFTVGMDNKSLQSGRQGYWV

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G21070		FIO1	FIONA1, methyltransferases (.1...		Lus10034481 [exp]	0	1
AT5G22030		UBP8	ubiquitin-specific protease 8 ...		Lus10021253 [exp]	1.4	0.9349
AT1G60490		PI3K, ATVPS34	PHOSPATIDYLINOSITOL 3-KINASE, ...		Lus10030885 [exp]	1.4	0.9362
AT5G42920		AtTHO5	THO complex, subunit 5 (.1.2)		Lus10006490 [exp]	2.0	0.9253
AT5G19280	FHA	RAG1, KAPP	ROOT ATTENUATED GROWTH 1, kina...		Lus10041216 [exp]	3.0	0.9276
AT4G33540			metallo-beta-lactamase family ...		Lus10008550 [exp]	5.3	0.9015
AT1G67580		CDKG;2	Protein kinase superfamily pro...		Lus10036995 [exp]	8.5	0.9218
AT3G54440			glycoside hydrolase family 2 p...		Lus10024155 [exp]	9.2	0.9198
AT2G25850		PAPS2	poly(A) polymerase 2 (.1), pol...		Lus10037589 [exp]	10.4	0.9145
AT3G51500			unknown protein		Lus10017918 [exp]	11.9	0.8824
AT5G67380		ATCKA1, CKA1	casein kinase alpha 1 (.1.2)		Lus10019288 [exp]	12.0	0.9058

Compare expression of checked genes

Lus10034481 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.