Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G21100 181 / 2e-57 Disease resistance-responsive (dirigent-like protein) family protein (.1) AT5G42510 143 / 2e-42 Disease resistance-responsive (dirigent-like protein) family protein (.1) AT1G65870 142 / 3e-42 Disease resistance-responsive (dirigent-like protein) family protein (.1) AT5G42500 140 / 2e-41 Disease resistance-responsive (dirigent-like protein) family protein (.1) AT1G58170 137 / 3e-40 Disease resistance-responsive (dirigent-like protein) family protein (.1) AT1G55210 135 / 2e-39 Disease resistance-responsive (dirigent-like protein) family protein (.1), Disease resistance-responsive (dirigent-like protein) family protein (.2) AT3G13650 134 / 6e-39 Disease resistance-responsive (dirigent-like protein) family protein (.1) AT1G22900 133 / 2e-38 Disease resistance-responsive (dirigent-like protein) family protein (.1) AT5G49040 132 / 3e-38 Disease resistance-responsive (dirigent-like protein) family protein (.1) AT3G13662 127 / 2e-36 Disease resistance-responsive (dirigent-like protein) family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025063 [exp] 393 / 5e-140 AT2G21100 183 / 4e-58 Disease resistance-responsive (dirigent-like protein) family protein (.1) Lus10025065 [exp] 234 / 1e-77 AT2G21100 199 / 1e-64 Disease resistance-responsive (dirigent-like protein) family protein (.1) Lus10025064 [exp] 231 / 7e-77 AT2G21100 197 / 9e-65 Disease resistance-responsive (dirigent-like protein) family protein (.1) Lus10034478 [exp] 231 / 5e-76 AT2G21100 191 / 1e-61 Disease resistance-responsive (dirigent-like protein) family protein (.1) Lus10034479 [exp] 227 / 2e-75 AT2G21100 189 / 9e-62 Disease resistance-responsive (dirigent-like protein) family protein (.1) Lus10027834 [exp] 221 / 2e-72 AT2G21100 182 / 5e-58 Disease resistance-responsive (dirigent-like protein) family protein (.1) Lus10005062 [exp] 212 / 1e-68 AT2G21100 184 / 7e-59 Disease resistance-responsive (dirigent-like protein) family protein (.1) Lus10034476 [exp] 210 / 2e-68 AT2G21100 220 / 1e-73 Disease resistance-responsive (dirigent-like protein) family protein (.1) Lus10025067 [exp] 203 / 9e-66 AT2G21100 214 / 3e-71 Disease resistance-responsive (dirigent-like protein) family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G131000 [exp] 190 / 5e-61 AT2G21100 236 / 4e-80 Disease resistance-responsive (dirigent-like protein) family protein (.1) Potri.016G061000 [exp] 164 / 9e-51 AT1G58170 214 / 2e-71 Disease resistance-responsive (dirigent-like protein) family protein (.1) Potri.006G195300 [exp] 164 / 2e-50 AT5G49040 202 / 2e-66 Disease resistance-responsive (dirigent-like protein) family protein (.1) Potri.001G023800 [exp] 162 / 7e-50 AT3G13650 171 / 2e-54 Disease resistance-responsive (dirigent-like protein) family protein (.1) Potri.016G060900 [exp] 157 / 1e-47 AT1G58170 197 / 1e-64 Disease resistance-responsive (dirigent-like protein) family protein (.1) Potri.001G214600 [exp] 155 / 2e-47 AT2G21100 164 / 6e-52 Disease resistance-responsive (dirigent-like protein) family protein (.1) Potri.003G216300 [exp] 154 / 1e-46 AT1G55210 221 / 5e-74 Disease resistance-responsive (dirigent-like protein) family protein (.1), Disease resistance-responsive (dirigent-like protein) family protein (.2) Potri.016G060700 [exp] 153 / 3e-46 AT1G65870 186 / 2e-60 Disease resistance-responsive (dirigent-like protein) family protein (.1) Potri.003G216400 [exp] 152 / 6e-46 AT1G58170 225 / 1e-75 Disease resistance-responsive (dirigent-like protein) family protein (.1) Potri.001G009100 [exp] 149 / 1e-44 AT1G58170 238 / 1e-80 Disease resistance-responsive (dirigent-like protein) family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0650 [flax] [poplar] AOC_barrel PF03018 [flax] [poplar] Dirigent Dirigent-like protein
Representative CDS sequence Show only first row Show all	>Lus10034482 pacid=23175844 polypeptide=Lus10034482 locus=Lus10034482.g ID=Lus10034482.BGIv1.0 annot-version=v1.0 ATGACGACGAAACCATCCTTAATCGTCGTCGTGGCTATCGCAATCGCCCTCTCATCATCAATTCCTTCATTCCTCGCTCAACAGCCCCCAACTCCCTCTC CGGCCGCCGTCAGCTGGGCGACCCGCCTCCCCTCCTCCTCCGGCAGCGACACCGTCACCAACCTCCAGTTCTACTTCCACGATATCCTCAGCGGGAACAA CCCGACAGCTGTCCAGGTCGCCTCCCCAGTCGGAGGATCCGGGTTTGGATCCATCTCGATGGCCGACGACCCGCTCACCGAGACATCCGACCCGAACTCC AAGCTCGTCGGTCGGGCTCAGGGGATCTACGCCTCCGCCTCGCAGTCTACGCTGGCGCTGCTGATGTCGATGAGCTACAGCTTCGTGGATGGGCCCTACA GCGGGAGCTCGCTGAGCATATTGGGCCGGAACGAGGTTATGACCCAGGGTCGGGAGCTCCCCGTTTTGGGCGGCACGGGTCTGTTCAGGATGGCACGTGG CTACGCCGTGCTCCAAACGACGTCGGCTAATTCGGCTGGGGACGCCGTCGTGTTTTATAATGTGACGGTCTTTGCTCCTTCGTCTAATGCCCAGAATGAG GCGCTTCCGTTTACTCCGGTTGGAGGTGGCGGTGGCGGTGGTGGAAGGAGGAGTGGAGGAGGTGGTGGTGGGAATGCAGGGGATTCTTCGCCGGCGGGGA GGGTGCCGGCGAGTGGATGGGTTGGGGCGGTGGTTGTGGCTGCTGTGGCGTGCTTTTTGTCGATGTGA
AA sequence Show only first row Show all	>Lus10034482 pacid=23175844 polypeptide=Lus10034482 locus=Lus10034482.g ID=Lus10034482.BGIv1.0 annot-version=v1.0 MTTKPSLIVVVAIAIALSSSIPSFLAQQPPTPSPAAVSWATRLPSSSGSDTVTNLQFYFHDILSGNNPTAVQVASPVGGSGFGSISMADDPLTETSDPNS KLVGRAQGIYASASQSTLALLMSMSYSFVDGPYSGSSLSILGRNEVMTQGRELPVLGGTGLFRMARGYAVLQTTSANSAGDAVVFYNVTVFAPSSNAQNE ALPFTPVGGGGGGGGRRSGGGGGGNAGDSSPAGRVPASGWVGAVVVAAVACFLSM

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G21100			Disease resistance-responsive ...		Lus10034482 [exp]	0	1
AT4G13510		ATAMT1;1, AMT1;...	ARABIDOPSIS THALIANA AMMONIUM ...		Lus10023705 [exp]	3.6	0.8512
AT2G46620			P-loop containing nucleoside t...		Lus10005991 [exp]	4.9	0.8363
AT3G16510			Calcium-dependent lipid-bindin...		Lus10006523 [exp]	6.0	0.8254
AT4G01575			serine protease inhibitor, Kaz...		Lus10030166 [exp]	6.3	0.8061
AT1G02170		AtMCP1b, ATMC1,...	LSD ONE LIKE 3, ARABIDOPSIS TH...		Lus10028157 [exp]	7.9	0.8389
AT2G37730			Protein of unknown function (D...		Lus10024364 [exp]	8.2	0.7846
AT2G39050		ArathEULS3	Euonymus lectin S3, hydroxypro...		Lus10006551 [exp]	9.2	0.8317
AT4G29680			Alkaline-phosphatase-like fami...		Lus10008562 [exp]	9.6	0.8324
AT3G25250		AtOXI1, OXI1, A...	oxidative signal-inducible1, A...		Lus10020411 [exp]	10.2	0.7726
AT5G48380		BIR1	BAK1-interacting receptor-like...		Lus10002147 [exp]	12.0	0.7847

Compare expression of checked genes

Lus10034482 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.