Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G38690 520 / 0 PLC-like phosphodiesterases superfamily protein (.1) AT4G34920 450 / 2e-160 PLC-like phosphodiesterases superfamily protein (.1) AT4G34930 418 / 1e-146 PLC-like phosphodiesterases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025062 [exp] 638 / 0 AT4G38690 520 / 0.0 PLC-like phosphodiesterases superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G172000 [exp] 532 / 0 AT4G38690 558 / 0.0 PLC-like phosphodiesterases superfamily protein (.1) Potri.009G131600 [exp] 521 / 0 AT4G38690 544 / 0.0 PLC-like phosphodiesterases superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0384 [flax] [poplar] PLC PF00388 [flax] [poplar] PI-PLC-X Phosphatidylinositol-specific phospholipase C, X domain
Representative CDS sequence Show only first row Show all	>Lus10034483 pacid=23175903 polypeptide=Lus10034483 locus=Lus10034483.g ID=Lus10034483.BGIv1.0 annot-version=v1.0 ATGGGTGCTCAAGTTTCCACTCAGATCGCCCGCCGGAAGGCCATCTCCACTGAGAAACAGACCCTCTGCGACCTCCAAGGAAACTGCGGTAACACTTTCC CTGGCTCCGACTACGTCCCACCGGACCGGAAAACATGGATGGCCGGAATCGGACCGGACAAGCTCCGTATCAACCAGATCGTATGGCCCGGAACCCACGA CTCCGCCACCAACAAGATCGGAATCCCGCTCGTCACGCGCCCCTTCGCGCAGTGCCAGTCCCTCTCCATCTACCGCCAGCTCTGCCGCGGGACCCGGGTC CTCGACGTCCGGGTCGGGTCGGACAGTCGGATCTGCCACGGAATTCTGAAGACCTACCACGTCGACGTCGTTCTGGATGACGTCAACAAGTTCTTGTCGG AGACCGAATCGGAGGTGATCGTGCTCGAGGTACGGACGGAGTTCGGACACGAGGATCCGCCGGAATTCGCGGCCTACCTGGAGGAGAAGTTAGGGGAGCA TTTGATCCGCCAGGACGACGCCGTTTTCGGGAAGACTGTGGCGGAATTGCTTCCGAAGAGAGTGATCTGTGTATGGAAGCCGAGGAAGTCTCCGGCGCCG AAACATGGGGATTTGCTGTGGGGCGCGGGGTACTTGAAGGACAATTGGATCGATACGGATCTGCCGTCGACGAAGTTCGAGAGCAATTTGAAGTTCCTGA GCCAGCAGTCGCCGGCGGCAGGGAGGAAGTTTTTTTACAGAGTGGAGAATACTGTGACGCCGCAGCCGGATAATCCGGTGGTGTGTGTGAAGCCGGTGAC TAAGCGGATTCATGGATACGCTAGGCTGTTTATAGTTCAGGCAATGGAGAAAGGGTGGGTCGATCGGATTCAGATATTATCGACGGATTTCATTGAGGAG GATTTTGTTGATGCTTGTGCTGGGCTTACTTACGCCAGAGCTGAAGGGAAAGCTTAG
AA sequence Show only first row Show all	>Lus10034483 pacid=23175903 polypeptide=Lus10034483 locus=Lus10034483.g ID=Lus10034483.BGIv1.0 annot-version=v1.0 MGAQVSTQIARRKAISTEKQTLCDLQGNCGNTFPGSDYVPPDRKTWMAGIGPDKLRINQIVWPGTHDSATNKIGIPLVTRPFAQCQSLSIYRQLCRGTRV LDVRVGSDSRICHGILKTYHVDVVLDDVNKFLSETESEVIVLEVRTEFGHEDPPEFAAYLEEKLGEHLIRQDDAVFGKTVAELLPKRVICVWKPRKSPAP KHGDLLWGAGYLKDNWIDTDLPSTKFESNLKFLSQQSPAAGRKFFYRVENTVTPQPDNPVVCVKPVTKRIHGYARLFIVQAMEKGWVDRIQILSTDFIEE DFVDACAGLTYARAEGKA

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G38690			PLC-like phosphodiesterases su...		Lus10034483 [exp]	0	1
AT5G40250			RING/U-box superfamily protein...		Lus10014526 [exp]	2.0	0.8270
AT1G31940			unknown protein		Lus10010425 [exp]	3.5	0.8277
AT4G39660		AGT2	alanine:glyoxylate aminotransf...		Lus10029922 [exp]	6.0	0.8228
AT3G07720			Galactose oxidase/kelch repeat...		Lus10006392 [exp]	6.9	0.7986
AT1G63220			Calcium-dependent lipid-bindin...		Lus10002235 [exp]	8.1	0.8022
AT5G60660		PIP2F, PIP2;4	plasma membrane intrinsic prot...		Lus10026504 [exp]	8.1	0.7799
AT1G35720		ATOXY5, ANNAT1	annexin 1 (.1)		Lus10003611 [exp]	9.4	0.8103
AT2G16760			Calcium-dependent phosphotries...		Lus10015347 [exp]	10.7	0.7600
AT1G04690		KV-BETA1, KAB1	potassium channel beta subunit...		Lus10011751 [exp]	11.4	0.7710
AT1G04690		KV-BETA1, KAB1	potassium channel beta subunit...		Lus10023674 [exp]	12.1	0.7899

Compare expression of checked genes

Lus10034483 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.