Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G21060 87 / 6e-22 ATCSP4, ATGRP2B COLD SHOCK DOMAIN PROTEIN 4, glycine-rich protein 2B (.1) AT4G38680 87 / 7e-22 ATCSP2, CSDP2, GRP2 COLD SHOCK DOMAIN PROTEIN 2, ARABIDOPSIS THALIANA COLD SHOCK PROTEIN 2, glycine rich protein 2 (.1) AT2G17870 78 / 1e-17 ATCSP3 ARABIDOPSIS COLD SHOCK DOMAIN PROTEIN 3, cold shock domain protein 3 (.1) AT4G36020 77 / 4e-17 CSDP1 cold shock domain protein 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025058 [exp] 122 / 6e-37 AT2G21060 112 / 6e-33 COLD SHOCK DOMAIN PROTEIN 4, glycine-rich protein 2B (.1) Lus10027839 [exp] 102 / 7e-28 AT2G21060 110 / 6e-31 COLD SHOCK DOMAIN PROTEIN 4, glycine-rich protein 2B (.1) Lus10005066 [exp] 101 / 9e-28 AT2G17870 122 / 1e-35 ARABIDOPSIS COLD SHOCK DOMAIN PROTEIN 3, cold shock domain protein 3 (.1) Lus10028073 [exp] 74 / 9e-17 AT4G36020 115 / 3e-31 cold shock domain protein 1 (.1) Lus10025623 [exp] 69 / 5e-15 ND 81 / 8e-20 Lus10028449 [exp] 67 / 1e-13 AT4G36020 158 / 3e-47 cold shock domain protein 1 (.1) Lus10041902 [exp] 66 / 1e-13 AT4G36020 159 / 2e-47 cold shock domain protein 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G172600 [exp] 88 / 4e-22 AT2G21060 102 / 3e-27 COLD SHOCK DOMAIN PROTEIN 4, glycine-rich protein 2B (.1) Potri.009G132000 [exp] 83 / 5e-20 AT2G21060 103 / 1e-27 COLD SHOCK DOMAIN PROTEIN 4, glycine-rich protein 2B (.1) Potri.002G086900 [exp] 71 / 9e-16 AT2G17870 89 / 2e-21 ARABIDOPSIS COLD SHOCK DOMAIN PROTEIN 3, cold shock domain protein 3 (.1) Potri.005G174300 [exp] 71 / 2e-15 AT2G17870 92 / 1e-22 ARABIDOPSIS COLD SHOCK DOMAIN PROTEIN 3, cold shock domain protein 3 (.1) Potri.005G112800 [exp] 66 / 2e-13 AT2G17870 86 / 1e-19 ARABIDOPSIS COLD SHOCK DOMAIN PROTEIN 3, cold shock domain protein 3 (.1) Potri.007G057100 [exp] 66 / 3e-13 AT4G36020 127 / 3e-35 cold shock domain protein 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0021 [flax] [poplar] OB PF00313 [flax] [poplar] CSD 'Cold-shock' DNA-binding domain CL0511 [flax] [poplar] Retroviral_zf PF00098 [flax] [poplar] zf-CCHC Zinc knuckle
Representative CDS sequence Show only first row Show all	>Lus10034487 pacid=23176077 polypeptide=Lus10034487 locus=Lus10034487.g ID=Lus10034487.BGIv1.0 annot-version=v1.0 ATGAGTGCCAGATTGTCCGGCAGAGTTAAGTGGTTCAATGACCAGAAGGGGTACGGCTTCATCACCCCTAACGACGGTAGCGAGGATCTCTTCGTTCACC AGTCCTCCATCCAGACCGAAGGCTTCCGCAGCCTCGCCGAAGACGAAGAGGCTATTGACGTGACCGGCCCTGATGGAAAACCCGTCCAAGGAGGAGGACG CGGTGGTGCTGGCGGTGGTGGAGGCGGCTATGGCGGTGGCGGCGGCTATGGTGGTGGCGGCGGCTATGGTGGAGGTGGTGGAAGATCCGGCGGGCGTGGC GGTGGAAATGGCTGCTACAGCTGCGGTGAGGATGGCCACATGGCTAGGGACTGCCCCACCGGAGGTGGTGGTGGTGGAGGAAGGTACTCTGGTGGAGGAG GTGGTGGCGGCGGCGGCAATGGCTGCTTCAACTGTGGAGGGAGTGGTCATTACGCTAGGGAGTGCCCTAATGCTGGTGGTGGCCGCTGA
AA sequence Show only first row Show all	>Lus10034487 pacid=23176077 polypeptide=Lus10034487 locus=Lus10034487.g ID=Lus10034487.BGIv1.0 annot-version=v1.0 MSARLSGRVKWFNDQKGYGFITPNDGSEDLFVHQSSIQTEGFRSLAEDEEAIDVTGPDGKPVQGGGRGGAGGGGGGYGGGGGYGGGGGYGGGGGRSGGRG GGNGCYSCGEDGHMARDCPTGGGGGGGRYSGGGGGGGGGNGCFNCGGSGHYARECPNAGGGR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G21060		ATCSP4, ATGRP2B	COLD SHOCK DOMAIN PROTEIN 4, g...		Lus10034487 [exp]	0	1
AT1G72210	bHLH	bHLH096	basic helix-loop-helix (bHLH) ...		Lus10015902 [exp]	1.0	0.9828
AT2G21060		ATCSP4, ATGRP2B	COLD SHOCK DOMAIN PROTEIN 4, g...		Lus10025058 [exp]	1.4	0.9623
AT5G10510	AP2_ERF	PLT3, AIL6	PLETHORA 3, AINTEGUMENTA-like ...		Lus10002657 [exp]	1.7	0.9585
AT1G28290		AGP31	arabinogalactan protein 31 (.1...		Lus10015434 [exp]	4.2	0.9346
AT5G49665			Zinc finger (C3HC4-type RING f...		Lus10028225 [exp]	5.1	0.9196
AT2G27970		CKS2	CDK-subunit 2 (.1)		Lus10021405 [exp]	5.2	0.8860
AT5G03670			unknown protein		Lus10035565 [exp]	5.5	0.9206
AT3G07590			Small nuclear ribonucleoprotei...		Lus10003727 [exp]	5.7	0.9200
AT2G36400	GRF	ATGRF3	growth-regulating factor 3 (.1...		Lus10014381 [exp]	6.0	0.9468
AT1G76860			Small nuclear ribonucleoprotei...		Lus10040487 [exp]	6.6	0.8949

Compare expression of checked genes

Lus10034487 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.