Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G38660 168 / 9e-50 Pathogenesis-related thaumatin superfamily protein (.1.2) AT4G24180 140 / 6e-40 ATTLP1 THAUMATIN-LIKE PROTEIN 1 (.1) AT1G20030 132 / 3e-36 Pathogenesis-related thaumatin superfamily protein (.1.2) AT1G75800 129 / 3e-35 Pathogenesis-related thaumatin superfamily protein (.1) AT4G36010 114 / 2e-29 Pathogenesis-related thaumatin superfamily protein (.1.2) AT4G38670 113 / 2e-29 Pathogenesis-related thaumatin superfamily protein (.1.2.3) AT1G18250 111 / 6e-29 ATLP-1 Pathogenesis-related thaumatin superfamily protein (.1.2) AT1G19320 110 / 9e-29 Pathogenesis-related thaumatin superfamily protein (.1) AT5G24620 114 / 1e-28 Pathogenesis-related thaumatin superfamily protein (.1.2) AT2G17860 107 / 1e-27 Pathogenesis-related thaumatin superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025055 [exp] 198 / 4e-62 AT4G38660 359 / 6e-125 Pathogenesis-related thaumatin superfamily protein (.1.2) Lus10041899 [exp] 164 / 3e-48 AT4G38660 363 / 2e-125 Pathogenesis-related thaumatin superfamily protein (.1.2) Lus10028447 [exp] 162 / 2e-47 AT4G38660 359 / 4e-124 Pathogenesis-related thaumatin superfamily protein (.1.2) Lus10013561 [exp] 157 / 8e-46 AT4G38660 326 / 2e-112 Pathogenesis-related thaumatin superfamily protein (.1.2) Lus10017266 [exp] 152 / 6e-44 AT4G24180 322 / 7e-111 THAUMATIN-LIKE PROTEIN 1 (.1) Lus10041901 [exp] 129 / 4e-35 AT4G36010 329 / 2e-113 Pathogenesis-related thaumatin superfamily protein (.1.2) Lus10033136 [exp] 120 / 1e-31 AT1G75800 375 / 8e-131 Pathogenesis-related thaumatin superfamily protein (.1) Lus10017265 [exp] 117 / 1e-30 AT1G75800 390 / 2e-136 Pathogenesis-related thaumatin superfamily protein (.1) Lus10034534 [exp] 116 / 4e-30 AT1G75800 376 / 5e-131 Pathogenesis-related thaumatin superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G132500 [exp] 194 / 8e-60 AT4G38660 338 / 3e-115 Pathogenesis-related thaumatin superfamily protein (.1.2) Potri.005G241000 [exp] 184 / 3e-56 AT4G24180 348 / 5e-121 THAUMATIN-LIKE PROTEIN 1 (.1) Potri.004G173200 [exp] 175 / 2e-52 AT4G38660 357 / 5e-123 Pathogenesis-related thaumatin superfamily protein (.1.2) Potri.005G112600 [exp] 169 / 2e-50 AT4G38660 348 / 2e-119 Pathogenesis-related thaumatin superfamily protein (.1.2) Potri.002G020400 [exp] 150 / 3e-43 AT4G38660 357 / 2e-123 Pathogenesis-related thaumatin superfamily protein (.1.2) Potri.014G040700 [exp] 142 / 6e-41 AT1G75030 342 / 5e-120 thaumatin-like protein 3 (.1) Potri.015G000800 [exp] 129 / 3e-35 AT5G24620 351 / 4e-120 Pathogenesis-related thaumatin superfamily protein (.1.2) Potri.001G221900 [exp] 127 / 4e-35 AT1G75800 271 / 5e-91 Pathogenesis-related thaumatin superfamily protein (.1) Potri.004G014512 [exp] 133 / 9e-35 AT5G38280 469 / 1e-157 PR5-like receptor kinase (.1) Potri.002G020500 [exp] 128 / 1e-34 AT1G75800 404 / 7e-142 Pathogenesis-related thaumatin superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0293 [flax] [poplar] CDC PF00314 [flax] [poplar] Thaumatin Thaumatin family
Representative CDS sequence Show only first row Show all	>Lus10034489 pacid=23176073 polypeptide=Lus10034489 locus=Lus10034489.g ID=Lus10034489.BGIv1.0 annot-version=v1.0 ATGGGTTTTCCGATTCCGAAGCAGAATAACTCAGTTTCTTTAAAAATCTCTGTTTCAGGCGTTTTGGGGGCGACGTTCACCTTCGTAAACCGATGCGACT ATACACTCTGGCCAGGGATTCTAGCCAATGCCGGAAGCCCTAAGCTCGATAGCACCGGATTCTCCCTCCCACAAGGTTCAACCCGCGCCTTCCAAGCTCC GACCGGCTGGTCGGGCAGGTTCTGGGCACGAACTGGCTGCACATTCGACGATTCCGGTTCCGGATCTTGCCAGACCGGCGACTGCGGGTCGGGTCTCGTC GAGTGCAACGGCCTCGGAGCCGCGCCTCCGGCTACTCTCGCGGAGGTCACCCTCGGAAGGGGGCGGGNNNNNNNNNNNNNGAGCGCCGCGTTCACCCCGC CGGCGATTTGTAGGCCGTCGTTTTATTCGGCGATGTTTAAAGCCGCCTGTCCCAAGTCCTATAGCTATGCGTACGATGATGCTACTAGTACTTTTACATG TACCGGAGCTGATTATACGGTCACATTTTGCCCCTCCTCGCCTAGTCAGAAGTCTGAATCCTACACACCAACAACGCCGGTGAGTGAAGGAGCAACGACT GGACAAGGAACTTTGGGAGGAACCCAAATGGCAGGCTCGGATGGAGGATCCGGAGTGCAGTACACGGGTACTGAGTCAGGTTACGGAACTGGATCCGATA CCGGTTCAGGTTATGGAACCACCGGGTCGGGCGGAGGGGACGGAGCAGGAGGGCAGACAATGTTGGCAGATGGATGGTTAGCTGGTTTAGCCATGGGAGG ATCAGAAAGAAGAGCTTCTTCTTCTTCTTCTTCTCTATGTGGAATAGTGGTTTCTTCAGCTGTTCTGGTACTGCTGGTTGGTTGTTCTTCTGGTCATTAC TGA
AA sequence Show only first row Show all	>Lus10034489 pacid=23176073 polypeptide=Lus10034489 locus=Lus10034489.g ID=Lus10034489.BGIv1.0 annot-version=v1.0 MGFPIPKQNNSVSLKISVSGVLGATFTFVNRCDYTLWPGILANAGSPKLDSTGFSLPQGSTRAFQAPTGWSGRFWARTGCTFDDSGSGSCQTGDCGSGLV ECNGLGAAPPATLAEVTLGRGRXXXXXSAAFTPPAICRPSFYSAMFKAACPKSYSYAYDDATSTFTCTGADYTVTFCPSSPSQKSESYTPTTPVSEGATT GQGTLGGTQMAGSDGGSGVQYTGTESGYGTGSDTGSGYGTTGSGGGDGAGGQTMLADGWLAGLAMGGSERRASSSSSSLCGIVVSSAVLVLLVGCSSGHY

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G24180		ATTLP1	THAUMATIN-LIKE PROTEIN 1 (.1)		Lus10034489 [exp]	0	1
AT3G18990	B3	REM39, VRN1	REDUCED VERNALIZATION RESPONSE...		Lus10036045 [exp]	1.0	0.9227
AT5G58930			Protein of unknown function (D...		Lus10040700 [exp]	3.2	0.8981
AT2G33610		CHB2, ATSWI3B	CHROMATIN REMODELING COMPLEX S...		Lus10025165 [exp]	4.0	0.8601
AT4G12060			Double Clp-N motif protein (.1...		Lus10031116 [exp]	9.8	0.8419
AT1G69390		ARC12, ATMINE1	accumulation and replication o...		Lus10037128 [exp]	11.4	0.8466
AT4G12060			Double Clp-N motif protein (.1...		Lus10031694 [exp]	13.3	0.8465
AT1G48480		RKL1	receptor-like kinase 1 (.1)		Lus10017996 [exp]	14.9	0.8514
AT1G14410		WHY1, ATWHY1, P...	A. THALIANA WHIRLY 1, ssDNA-bi...		Lus10036723 [exp]	15.0	0.8481
AT1G79580	NAC	ANAC033, SMB, N...	NAC (No Apical Meristem) domai...		Lus10035400 [exp]	16.5	0.8373
AT5G24020		ARC11, ATMIND1,...	ACCUMULATION AND REPLICATION O...		Lus10038843 [exp]	17.7	0.8078

Compare expression of checked genes

Lus10034489 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.