Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G38650 565 / 0 Glycosyl hydrolase family 10 protein (.1) AT4G33840 336 / 6e-109 Glycosyl hydrolase family 10 protein (.1) AT4G33830 326 / 4e-105 Glycosyl hydrolase family 10 protein (.1) AT4G33860 325 / 7e-105 Glycosyl hydrolase family 10 protein (.1) AT4G38300 302 / 1e-99 glycosyl hydrolase family 10 protein (.1) AT4G33810 249 / 3e-76 Glycosyl hydrolase superfamily protein (.1) AT4G33820 250 / 7e-76 Glycosyl hydrolase superfamily protein (.1) AT1G58370 246 / 8e-72 ATXYN1, RXF12 ARABIDOPSIS THALIANA XYLANASE 1, glycosyl hydrolase family 10 protein / carbohydrate-binding domain-containing protein (.1) AT2G14690 236 / 1e-70 Glycosyl hydrolase superfamily protein (.1) AT1G10050 225 / 5e-64 glycosyl hydrolase family 10 protein / carbohydrate-binding domain-containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025054 [exp] 907 / 0 AT4G38650 677 / 0.0 Glycosyl hydrolase family 10 protein (.1) Lus10020985 [exp] 326 / 4e-105 AT4G33840 634 / 0.0 Glycosyl hydrolase family 10 protein (.1) Lus10014642 [exp] 323 / 7e-104 AT4G33840 663 / 0.0 Glycosyl hydrolase family 10 protein (.1) Lus10033786 [exp] 321 / 7e-103 AT4G33860 663 / 0.0 Glycosyl hydrolase family 10 protein (.1) Lus10033784 [exp] 322 / 2e-100 AT4G33820 480 / 2e-160 Glycosyl hydrolase superfamily protein (.1) Lus10014646 [exp] 254 / 7e-79 AT4G33820 336 / 6e-110 Glycosyl hydrolase superfamily protein (.1) Lus10007243 [exp] 237 / 5e-68 AT1G58370 1291 / 0.0 ARABIDOPSIS THALIANA XYLANASE 1, glycosyl hydrolase family 10 protein / carbohydrate-binding domain-containing protein (.1) Lus10028243 [exp] 234 / 6e-67 AT1G58370 1278 / 0.0 ARABIDOPSIS THALIANA XYLANASE 1, glycosyl hydrolase family 10 protein / carbohydrate-binding domain-containing protein (.1) Lus10028242 [exp] 221 / 1e-63 AT1G58370 998 / 0.0 ARABIDOPSIS THALIANA XYLANASE 1, glycosyl hydrolase family 10 protein / carbohydrate-binding domain-containing protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G173300 [exp] 625 / 0 AT4G38650 753 / 0.0 Glycosyl hydrolase family 10 protein (.1) Potri.009G087900 [exp] 331 / 7e-107 AT4G33840 695 / 0.0 Glycosyl hydrolase family 10 protein (.1) Potri.009G087800 [exp] 307 / 1e-97 AT4G33840 573 / 0.0 Glycosyl hydrolase family 10 protein (.1) Potri.009G087700 [exp] 303 / 3e-96 AT4G33860 529 / 0.0 Glycosyl hydrolase family 10 protein (.1) Potri.009G087600 [exp] 302 / 4e-96 AT4G33820 506 / 4e-175 Glycosyl hydrolase superfamily protein (.1) Potri.002G113132 [exp] 246 / 1e-71 AT1G58370 1352 / 0.0 ARABIDOPSIS THALIANA XYLANASE 1, glycosyl hydrolase family 10 protein / carbohydrate-binding domain-containing protein (.1) Potri.002G113066 [exp] 237 / 2e-69 AT1G58370 1064 / 0.0 ARABIDOPSIS THALIANA XYLANASE 1, glycosyl hydrolase family 10 protein / carbohydrate-binding domain-containing protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0202 [flax] [poplar] GBD PF02018 [flax] [poplar] CBM_4_9 Carbohydrate binding domain CL0058 [flax] [poplar] Glyco_hydro_tim PF00331 [flax] [poplar] Glyco_hydro_10 Glycosyl hydrolase family 10
Representative CDS sequence Show only first row Show all	>Lus10034490 pacid=23175960 polypeptide=Lus10034490 locus=Lus10034490.g ID=Lus10034490.BGIv1.0 annot-version=v1.0 ATGGGCTTCTGTACGATCATACAGCTTACATTGAGTGCCAGCGCGCGACGGACACAACCCCCCCCCCCCCAGCCGCTATACGGCGGGGGGATTCTCAGGC ACCGGCGGCCAGTTCAGTGGAAGGACAATGAAGATTCTTCGCCGGCTTTCATATTGAGTAATCTTACTCAAGGCTCCTTTTACTCTTTCTCAGTATGGGT GAAGGTGAAAGCTGGAAAACCAACAACTGTGACAGCAAGACTAAAGACAGACAACACTACATACGGCTGCATAGGCAGTGTTTTGGCTAAGAATAACTGC TGGTCTTTTCTCAAAGGCGGATTCGTCCTCGAAGAAGAACCCTCAGCTTCCACCATTTTGTATCTCCAGGTTATAACCAAACTCGACTCTGCTCGAGTTC TGAAACTTGTATCATCATCAACTGATCAGTTCTCTAATGCTTGTCAACATATGTTACAGAGTCCGTCGCAAAAGAGGCTTGCAGTTTCGATCACAAGCGG TTCGTTACAGCCATTTACATCAGAGGAATGGACGGCTAATCAGCAGAACATTATAGACACTCAAAGGAAACGAGCTGTGACAGTTCATGTATCGGATAGC ACAGGAAACAGGCTAAAAGGAGCTTCTATCAAGGTTGAGCAATTGTCCAAAGACTTCCCTTTCGGATCCGCCATCTCCAAGACTATCCTGGGAAACCAGG CGTATCAGAAATGGTACCTGGAGAGATTCAACGCGGCGGTGTTCGAGAACGAGCTGAAATGGTACGCCACGGAGCCCAAACAGGGCCAGCTAAACTACAC AATACCAGACAAGATGATGGAATTCGTCAGATCCAACGGATTACTAACCAGAGGCCACAACATCTTCTGGGAAGATCCCAAATACACACCCGAATGGGTG AAACAACTCGCCGGCGAACAACTCCACGCCGCCGTCGAATCGAGAATCCGGAGCCTGATGAACAAGTACAGGGAAGAGTTCGTCAACTGGGACGTCAGCA ACGAGATGCTCCACTTCAATTTCTACGAAGAAAAATTGGGCCGCGACGCCACCCTGCACTTCTTCAAGACCGCTCACGAATCCGACCCGCTGGCCACCCT GTTCATGAACGACTACAACGTCGTCGAGAGCTGCACCGATCTCAACTCGACGGTGGACAATTACATCTCTAGGTTGAAGGAGCTGCAGCAAGGCGGAGCT ACAATGGACGGAATCGGCCTCGAGTTCAGGTTACTGGAAGCAAGGTATTTGGAGAGAGTCCTGAGAGAAGGGTTTTCACACCCGGCGGTGGATGGGATAA TGCTGTGGACGGCGCTTGATACCAAGGGCTGCTACGAGATGTGCTTGACGGATAACGATATTAAAAACTTGCCGGCGGGGGATACTGTGGATAAGTTGCT GAAAGAGTGGAGCACCGGGGAGGTGAATGGGAGCTCCGACGAGCAAGGGTCGTATAGCTTTTATGGGTACTTGGGAGAGTACAGTGTGAAGGTGGAGTAT GGCGGTAGAGTAGTGAATTCGACATTGGCTCTTAGTAAAGGTGATGAGACTAAACAGTTGAGTATTCGAGTTTAG
AA sequence Show only first row Show all	>Lus10034490 pacid=23175960 polypeptide=Lus10034490 locus=Lus10034490.g ID=Lus10034490.BGIv1.0 annot-version=v1.0 MGFCTIIQLTLSASARRTQPPPPQPLYGGGILRHRRPVQWKDNEDSSPAFILSNLTQGSFYSFSVWVKVKAGKPTTVTARLKTDNTTYGCIGSVLAKNNC WSFLKGGFVLEEEPSASTILYLQVITKLDSARVLKLVSSSTDQFSNACQHMLQSPSQKRLAVSITSGSLQPFTSEEWTANQQNIIDTQRKRAVTVHVSDS TGNRLKGASIKVEQLSKDFPFGSAISKTILGNQAYQKWYLERFNAAVFENELKWYATEPKQGQLNYTIPDKMMEFVRSNGLLTRGHNIFWEDPKYTPEWV KQLAGEQLHAAVESRIRSLMNKYREEFVNWDVSNEMLHFNFYEEKLGRDATLHFFKTAHESDPLATLFMNDYNVVESCTDLNSTVDNYISRLKELQQGGA TMDGIGLEFRLLEARYLERVLREGFSHPAVDGIMLWTALDTKGCYEMCLTDNDIKNLPAGDTVDKLLKEWSTGEVNGSSDEQGSYSFYGYLGEYSVKVEY GGRVVNSTLALSKGDETKQLSIRV

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G38650			Glycosyl hydrolase family 10 p...		Lus10034490 [exp]	0	1
AT3G03770			Leucine-rich repeat protein ki...		Lus10034873 [exp]	1.4	0.8804
AT3G53140			O-methyltransferase family pro...		Lus10014400 [exp]	2.6	0.8245
AT1G10510		EMB2004	embryo defective 2004, RNI-lik...		Lus10030829 [exp]	3.5	0.8344
AT3G03770			Leucine-rich repeat protein ki...		Lus10033407 [exp]	3.7	0.8564
AT1G48100			Pectin lyase-like superfamily ...		Lus10017109 [exp]	5.7	0.8458
AT3G26430			GDSL-like Lipase/Acylhydrolase...		Lus10003021 [exp]	11.0	0.8294
AT3G55400		OVA1	OVULE ABORTION 1, methionyl-tR...		Lus10001704 [exp]	11.7	0.8050
AT1G79560		EMB36, EMB156, ...	EMBRYO DEFECTIVE 36, EMBRYO DE...		Lus10031169 [exp]	21.9	0.8262
AT5G14600			S-adenosyl-L-methionine-depend...		Lus10032134 [exp]	22.5	0.7472
AT3G12110		ACT11	actin-11 (.1)		Lus10005163 [exp]	23.3	0.8056

Compare expression of checked genes

Lus10034490 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.