Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G34950 618 / 0 Major facilitator superfamily protein (.1) AT2G16660 617 / 0 Major facilitator superfamily protein (.1) AT1G80530 268 / 1e-82 Major facilitator superfamily protein (.1) AT2G28120 253 / 9e-77 Major facilitator superfamily protein (.1) AT2G39210 246 / 6e-74 Major facilitator superfamily protein (.1) AT5G50520 237 / 6e-71 Major facilitator superfamily protein (.1) AT5G50630 237 / 6e-71 Major facilitator superfamily protein (.1) AT3G01930 223 / 2e-65 Major facilitator superfamily protein (.1.2) AT5G14120 222 / 6e-65 Major facilitator superfamily protein (.1) AT1G74780 213 / 6e-62 Nodulin-like / Major Facilitator Superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025053 [exp] 832 / 0 AT4G34950 793 / 0.0 Major facilitator superfamily protein (.1) Lus10028803 [exp] 275 / 4e-85 AT1G80530 707 / 0.0 Major facilitator superfamily protein (.1) Lus10001678 [exp] 275 / 5e-85 AT1G80530 649 / 0.0 Major facilitator superfamily protein (.1) Lus10017971 [exp] 273 / 2e-84 AT1G80530 716 / 0.0 Major facilitator superfamily protein (.1) Lus10017480 [exp] 273 / 2e-84 AT1G80530 702 / 0.0 Major facilitator superfamily protein (.1) Lus10041962 [exp] 273 / 3e-84 AT1G80530 715 / 0.0 Major facilitator superfamily protein (.1) Lus10032034 [exp] 232 / 9e-69 AT3G01930 874 / 0.0 Major facilitator superfamily protein (.1.2) Lus10042170 [exp] 231 / 1e-68 AT1G74780 566 / 0.0 Nodulin-like / Major Facilitator Superfamily protein (.1) Lus10035203 [exp] 231 / 3e-68 AT3G01930 876 / 0.0 Major facilitator superfamily protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G173400 [exp] 670 / 0 AT4G34950 682 / 0.0 Major facilitator superfamily protein (.1) Potri.009G132700 [exp] 660 / 0 AT4G34950 661 / 0.0 Major facilitator superfamily protein (.1) Potri.005G112400 [exp] 561 / 0 AT4G34950 618 / 0.0 Major facilitator superfamily protein (.1) Potri.006G060900 [exp] 293 / 5e-92 AT1G80530 632 / 0.0 Major facilitator superfamily protein (.1) Potri.003G012300 [exp] 278 / 3e-86 AT1G80530 650 / 0.0 Major facilitator superfamily protein (.1) Potri.001G204700 [exp] 257 / 2e-78 AT1G80530 625 / 0.0 Major facilitator superfamily protein (.1) Potri.009G006400 [exp] 240 / 6e-72 AT2G28120 845 / 0.0 Major facilitator superfamily protein (.1) Potri.004G215600 [exp] 235 / 3e-70 AT2G28120 810 / 0.0 Major facilitator superfamily protein (.1) Potri.017G064201 [exp] 235 / 7e-70 AT3G01930 805 / 0.0 Major facilitator superfamily protein (.1.2) Potri.006G122400 [exp] 234 / 2e-69 AT2G39210 767 / 0.0 Major facilitator superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0015 [flax] [poplar] MFS PF06813 [flax] [poplar] Nodulin-like Nodulin-like
Representative CDS sequence Show only first row Show all	>Lus10034491 pacid=23175917 polypeptide=Lus10034491 locus=Lus10034491.g ID=Lus10034491.BGIv1.0 annot-version=v1.0 ATGGGACTAATAACCACCACCCTCAAATCCTCCTCCCTGACACCCTCCGCGGACACCCTCAAATGGCTCGGCCTTGTCACTGCCATCTGGGTCCAAGCAA TCTCCGGCAACAACTACACCTTCGCTAACTACTCCCACTCCCTCAAATCCCTAATGAACCTCAACCAGCTCCAGCTCAACAACCTCTCCGTCGCCAAGGA CGTCGGCAAGGCCTTCGGTCTCCTCGCCGGACTCGCCTCCGACCGCTTCCCCACCTGGCTCCTCCTCCTCATCGGCTCAATCGAAGGCCTCATCGGCTAC GGCGTCCAGTGGCTTGTCGTCAGCCAGAGGATCTCCCCAATCCCTTACTGGCAGATGTGCGTCTTCCTCTGCCTCGGCGGGAACTCCACCACCTGGATGA ACACGTCCGTCCTCGTCACCTGCATACGTAACTTCCGCCGCAACCGCGGCCCTGTTTCCGGGATTTTGAAAGGATTCGTAGGGTTGAGCACCGCCATATT CACTGACCTCTGCACGGCTTTCTTCTCCGAAGATCCCGGAACTTTTTTGCTCATGCTTGCGCTCGTCCCTTTCGGAGTCTGTTTGGCTGCGATCTTCTTC CTCCGTGAGCTCCCTCCGGCGAACACTCTCGCCGAGGAGAAGGAAGAGGCCAAGTACTTCTCAGCATTCAATGTCGTCGCAGTCGTCGTCGCCGTTTTCC TCTTGGCGTACGATTTCACCCCCAATCCTTCACGATTCCTCTCGCTAGGATTCGGATTCACTCTCTTAGCACTCCTCGCATCGCCGATTGCGGTTCCGAT TCATAAATTCGTTAAAGGAATCAAGATCGCTGCTCTCAACAAGGCCGACATTGAGCGGAATCAGGTCGGAATCGAGGAGCCGCTTCTAATTGATGAACAA AATTCGGAATCTGCTGCAACTGCGGCGGTGACGGCGGATGCGACGGAGGAGGAGAAGAGGAAGCCGGTGATCGGGGAAGAGCACACGATAGTGGAGGCGT TGAGTACGTTGGATTTCTGGATTCTGTTTGTTTCGTTTCTCTGCGGCGTTGGCACCGGCTTGGCCGTGATGAACAATACGGGCCAAATTGGACTGGCGCT TGGATACGTCGACGTCTCGATCTTCGTCTCGCTGACCAGCATTTTCGGTTTCTTCGGCCGGATCGTCTCCGGATCGGTCTCGGAGTACTTTGTCAAGAAA TCAGGAACACCAAGGCCACTGTGGAACGCAGCCTCTCAAATCCTGATGGCAGTAGGATACATCCTCCTCGCCCTGGCCTTGCCCGGGTCACTCTATGTGG GCTCGATCCTCGTCGGAATCTGCTACGGAGTCCGATTGGCCGTTTCGGTTCCAACAGCGTCGGAACTCTTTGGACTCAAGTACTACGGCCTGATCTACAA CATTTTGATTCTCAATCTCCCTCTAGGCTCCTTTCTATTCTCCGGCCTGCTCGCAGGACTTCTGTACGACGCGGAGGCTACTCCGGTCCCCGGAGGAGGG AACACTTGCGTCGGCGCGCATTGCTACAGGATGGTGTTCATTGTCATGGCGGTTGCTTGCATTGCTGGGTTTGCTCTTGATGTGTTGTTGGCCGTTAGGA CCAAGGCGGTTTATAACAGGATTTACTCGAGTAGGAAGTCGAGGAAGATCAGTAGCTAG
AA sequence Show only first row Show all	>Lus10034491 pacid=23175917 polypeptide=Lus10034491 locus=Lus10034491.g ID=Lus10034491.BGIv1.0 annot-version=v1.0 MGLITTTLKSSSLTPSADTLKWLGLVTAIWVQAISGNNYTFANYSHSLKSLMNLNQLQLNNLSVAKDVGKAFGLLAGLASDRFPTWLLLLIGSIEGLIGY GVQWLVVSQRISPIPYWQMCVFLCLGGNSTTWMNTSVLVTCIRNFRRNRGPVSGILKGFVGLSTAIFTDLCTAFFSEDPGTFLLMLALVPFGVCLAAIFF LRELPPANTLAEEKEEAKYFSAFNVVAVVVAVFLLAYDFTPNPSRFLSLGFGFTLLALLASPIAVPIHKFVKGIKIAALNKADIERNQVGIEEPLLIDEQ NSESAATAAVTADATEEEKRKPVIGEEHTIVEALSTLDFWILFVSFLCGVGTGLAVMNNTGQIGLALGYVDVSIFVSLTSIFGFFGRIVSGSVSEYFVKK SGTPRPLWNAASQILMAVGYILLALALPGSLYVGSILVGICYGVRLAVSVPTASELFGLKYYGLIYNILILNLPLGSFLFSGLLAGLLYDAEATPVPGGG NTCVGAHCYRMVFIVMAVACIAGFALDVLLAVRTKAVYNRIYSSRKSRKISS

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G34950			Major facilitator superfamily ...		Lus10034491 [exp]	0	1
AT5G60900		RLK1	receptor-like protein kinase 1...		Lus10031230 [exp]	2.8	0.8619
AT2G23200			Protein kinase superfamily pro...		Lus10012101 [exp]	5.3	0.8491
AT3G07360		ATPUB9	ARABIDOPSIS THALIANA PLANT U-B...		Lus10025885 [exp]	8.7	0.8531
AT2G36910		ATMDR1, ATPGP1,...	P-GLYCOPROTEIN 1, ARABIDOPSIS ...		Lus10014427 [exp]	9.0	0.8551
					Lus10022598 [exp]	11.7	0.8561
AT3G27330			zinc finger (C3HC4-type RING f...		Lus10014568 [exp]	13.0	0.8364
AT5G20190			Tetratricopeptide repeat (TPR)...		Lus10030103 [exp]	14.6	0.8537
AT5G53830			VQ motif-containing protein (....		Lus10005543 [exp]	15.7	0.8483
AT3G50120			Plant protein of unknown funct...		Lus10009871 [exp]	22.5	0.8253
AT2G18940			Tetratricopeptide repeat (TPR)...		Lus10000036 [exp]	23.2	0.8476

Compare expression of checked genes

Lus10034491 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.