Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G38640 574 / 0 Plasma-membrane choline transporter family protein (.1) AT3G15380 45 / 0.0001 Plasma-membrane choline transporter family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025051 [exp] 924 / 0 AT4G38640 674 / 0.0 Plasma-membrane choline transporter family protein (.1) Lus10035837 [exp] 51 / 3e-06 AT3G15380 561 / 0.0 Plasma-membrane choline transporter family protein (.1) Lus10036620 [exp] 50 / 4e-06 AT3G15380 1154 / 0.0 Plasma-membrane choline transporter family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G132900 [exp] 637 / 0 AT4G38640 631 / 0.0 Plasma-membrane choline transporter family protein (.1) Potri.004G173600 [exp] 618 / 0 AT4G38640 620 / 0.0 Plasma-membrane choline transporter family protein (.1) Potri.010G128100 [exp] 50 / 3e-06 AT1G25500 581 / 0.0 Plasma-membrane choline transporter family protein (.1.2.3) Potri.008G118200 [exp] 47 / 3e-05 AT1G25500 588 / 0.0 Plasma-membrane choline transporter family protein (.1.2.3) Potri.011G121100 [exp] 44 / 0.0005 AT3G15380 1135 / 0.0 Plasma-membrane choline transporter family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04515 [flax] [poplar] Choline_transpo Plasma-membrane choline transporter
Representative CDS sequence Show only first row Show all	>Lus10034492 pacid=23176112 polypeptide=Lus10034492 locus=Lus10034492.g ID=Lus10034492.BGIv1.0 annot-version=v1.0 ATGGGAAGTAACACCGACGAAGCAGACAACAAGAGAGTCGCATCCTCTTCATCCTCCTCATCCCCAACTCACCCGCTCCTCTTCAAGCCGCCGATCGACG AACCCACCACGTCCGACCCGTTTTCACACGAATCCGACCCGACCCAGTTCCTCCAGATCTCGTACAATTCTGGACACAGGCAGTTCAAGGACATCACTTT CCTGATCCTTTTCCTCCTCTTCCTCCTCTCAACTTTCGGCCTCGGCATGTTCTCGATCGCCCATAAAAATCCCAATTACGGCAACCTCTCCTCCTTCACC TTCGATTCCCAATCCTACTCCTGCGTACCCACCTCACCAAACTCACCTTCTTCATCCCCTACAGTCAATTTCTACTACTTCCTCGTCAACTTGGGCGAAT CCCGCGGGTTCGTCGACGGTCTGATATGGGTAATCGTTGCAACAGTGATCCTGAGCGGACCCATCAGTTTCCTCCTGCTTTTCTCTCTCAGGCATTACAC CAAATACCTTGTCTACGCTTCTCTCCCCTTCTTCATCATCATCCCAATCTTCTTCAACGTCTACTGGTTCGTCGCCTGCACTGTCAGCGCTTCCTGCAGC GCTGCTCTGCCTCTGGGATACAGGATTTTCGTCATGGCTCTAATCTTTGTGGTGATCGGTGTGCTGGTGTGGATTCTGGTGGCGAATTGGTACAGAGTCG AGCTGACTATAGACATAATTGGGGTTGCTTCTGATGCACTGTACAAGAATTTGGGACTGTTCGTTGCATTGCCGTTGTTGACATTTGGATTGGCGGTTTA CTATGTCCCCATTGTGGTGTTCTTAGTGTTTGCGAGGTTTAATGGGGAGATAGTGCCCAAGGAGTTGCATGGAGAGTTTCATTGTGGTTGGAAGGAAGAT CGTTGGGTCCCTGCTTACTATACTTTGGCAATTGTTACTTTGTTGTGGTCGTCTGCGGCCATGGTGGAAGCTCAGGTTTATGTGATCAGTGGAACAATTG GTCAGTGGTACTTCTCTAAGGGGGATTCGCCGCCTAAACGTGGCATAAGAACTTCTCTCAGGTGGGAGATTCTATGGAACATGTTGTTTGAGCTTGCCCC TAGCTTTGTTTTCGAAGCTGATGGGGTCATTTCGTTGATGTGTCTCAACTCTTGCAGCAATGCCTTCGGCCCCTCCTCCGGCACCATATGTCTCTCAGGC TTATTTATCTTTATCGTTCGCATGGTACGAGCAGCTGTCGATAGTGCAAAACGAGAAGACAGCTCCGGCATTGTGAATCTTATACTGCGGACTTGTGTCA ACGCCCTCCTCTCGGCAATTGAATTTCTCAACAAGTTCACCATCAACTTCGTTGCAATAACTGGTGAATCCTACTGCACTTCAGCACGCATGGCTTACGA AGTCCTAAAGCGTAACCTCCTCTCCGCCGTCTTCGTGGAGGTTATCTCCACTCGAATACTAGGCGGCATCACGTTTGTTCTCTCAGCTGTATACGCAATT GCGGTCTGTGCGATACTTAAGGGTGCCACGAATCTCGGCACCGACTCGTACTATGTGGCGATGCTGGCGTGGGTGGTGCTGATTGTGGTGTTGGGATTCC TTGTACATGTGCTGGACAATGTGATTGACACCATCTACATGTGTTACGCCATAGATAGAGATAGAGGTGAAGTGTACAAGTCAGATGTTCATGAGGTGTA TGTGCATTTGCCCATCAGTAGGAACAATAGGCCAAGTTTGGGTCCTAGAACTTCTGCAGTTGTATGA
AA sequence Show only first row Show all	>Lus10034492 pacid=23176112 polypeptide=Lus10034492 locus=Lus10034492.g ID=Lus10034492.BGIv1.0 annot-version=v1.0 MGSNTDEADNKRVASSSSSSSPTHPLLFKPPIDEPTTSDPFSHESDPTQFLQISYNSGHRQFKDITFLILFLLFLLSTFGLGMFSIAHKNPNYGNLSSFT FDSQSYSCVPTSPNSPSSSPTVNFYYFLVNLGESRGFVDGLIWVIVATVILSGPISFLLLFSLRHYTKYLVYASLPFFIIIPIFFNVYWFVACTVSASCS AALPLGYRIFVMALIFVVIGVLVWILVANWYRVELTIDIIGVASDALYKNLGLFVALPLLTFGLAVYYVPIVVFLVFARFNGEIVPKELHGEFHCGWKED RWVPAYYTLAIVTLLWSSAAMVEAQVYVISGTIGQWYFSKGDSPPKRGIRTSLRWEILWNMLFELAPSFVFEADGVISLMCLNSCSNAFGPSSGTICLSG LFIFIVRMVRAAVDSAKREDSSGIVNLILRTCVNALLSAIEFLNKFTINFVAITGESYCTSARMAYEVLKRNLLSAVFVEVISTRILGGITFVLSAVYAI AVCAILKGATNLGTDSYYVAMLAWVVLIVVLGFLVHVLDNVIDTIYMCYAIDRDRGEVYKSDVHEVYVHLPISRNNRPSLGPRTSAVV

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G38640			Plasma-membrane choline transp...		Lus10034492 [exp]	0	1
AT1G65930		cICDH	cytosolic NADP+-dependent isoc...		Lus10020798 [exp]	3.6	0.9479
AT1G11300			protein serine/threonine kinas...		Lus10039731 [exp]	6.5	0.9369
AT5G15270			RNA-binding KH domain-containi...		Lus10036767 [exp]	7.7	0.9321
AT1G06890			nodulin MtN21 /EamA-like trans...		Lus10042217 [exp]	8.2	0.9186
AT3G26040			HXXXD-type acyl-transferase fa...		Lus10036929 [exp]	10.0	0.9128
AT5G10820			Major facilitator superfamily ...		Lus10026890 [exp]	12.7	0.9285
AT5G03700			D-mannose binding lectin prote...		Lus10023868 [exp]	12.7	0.9310
AT5G37600		ATGLN1;1, GLN1;...	ARABIDOPSIS THALIANA GLUTAMINE...		Lus10010203 [exp]	13.1	0.9159
AT1G02520		MDR8, ABCB11, P...	multi-drug resistance 8, ATP-b...		Lus10010067 [exp]	13.3	0.9304
AT4G05390		ATRFNR1	root FNR 1 (.1.2)		Lus10023266 [exp]	13.9	0.9341

Compare expression of checked genes

Lus10034492 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.