Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G38630 460 / 7e-162 ATMCB1, MBP1, AT-MCB1 ,RPN10 MULTIUBIQUITIN-CHAIN-BINDING PROTEIN 1, MULTIUBIQUITIN CHAIN BINDING PROTEIN 1, regulatory particle non-ATPase 10 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025050 [exp] 641 / 0 AT4G38630 509 / 4e-180 MULTIUBIQUITIN-CHAIN-BINDING PROTEIN 1, MULTIUBIQUITIN CHAIN BINDING PROTEIN 1, regulatory particle non-ATPase 10 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G133000 [exp] 510 / 0 AT4G38630 436 / 3e-152 MULTIUBIQUITIN-CHAIN-BINDING PROTEIN 1, MULTIUBIQUITIN CHAIN BINDING PROTEIN 1, regulatory particle non-ATPase 10 (.1) Potri.004G173700 [exp] 488 / 7e-173 AT4G38630 397 / 5e-137 MULTIUBIQUITIN-CHAIN-BINDING PROTEIN 1, MULTIUBIQUITIN CHAIN BINDING PROTEIN 1, regulatory particle non-ATPase 10 (.1) Potri.007G056200 [exp] 456 / 5e-160 AT4G38630 397 / 6e-137 MULTIUBIQUITIN-CHAIN-BINDING PROTEIN 1, MULTIUBIQUITIN CHAIN BINDING PROTEIN 1, regulatory particle non-ATPase 10 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF02809 [flax] [poplar] UIM Ubiquitin interaction motif CL0128 [flax] [poplar] vWA-like PF04056 [flax] [poplar] Ssl1 Ssl1-like
Representative CDS sequence Show only first row Show all	>Lus10034493 pacid=23176132 polypeptide=Lus10034493 locus=Lus10034493.g ID=Lus10034493.BGIv1.0 annot-version=v1.0 ATGGTTCTCGAGGCGACTATGATATGCATTGACAATTCGGAATGGATGAGGAACGGGGATTACTCTCCTTCTCGATTCCAAGCTCAAGCGGATGCCGTCA GTCTAATCTGCGGAGCGAAGACCCAGTCTAATCCGGAGAATACAGTAGGGATTCTGACGATGGCTGGTAAAGGCGTGCGTGTGTTGACTACACCCACTAC TGATCTCGGCAAACTCCTGGCTTGTATGCATGGTCTTGATATAGGTGGTGAAATGAACATAACGTCCGCGGTTCAGATTGCCCAACTGGCTCTTAAGCAT CGTCAGAACAAGAATCAGCGACAAAGAATCATAGTATTTGCTGGAAGTCCGATCAAATACGATAAGAAGGTGCTTGAGTCCATAGGAAAGAAATTGAAGA AGAGTAGTGTCTCTCTCGATATTGTGGATTTTGGTGAGGAAGATGATGGAAAGCCAGAGAAATTAGAGGCCCTCCTCGCAGCTGTCAATAACAATGACAG CAGTCATATAGTTCACATTCCTCCTGGTCCGAATGCGCTGTCTGATGTTCTTATCAGCACTCCTGTGTTTACGGGTGATGGAGAAGGGGGAGCTGGATTT GTACCAGCTGGGCCAGCAGCTGGTGGTGACTACGATTTTGGTGTAGATCCCAACATTGATCCTGAGCTGGCCCTTGCCCTTAGAGTTTCTATGGAAGAGG AGAGGGCAAGGCAAGAAGCTGCGGCTAAAAGGGCTGCTGAGGAAGCTTCAACACAGGAAAAAGGAGATGGAGAATCATCCAAGTCACAGGATACAACAAT GGCCGACAGTGCTACAGCTACAGCTGCAGCGGCTGATTCTACTGAGCCAATGAGTGAGGTGGATGCATTACTGCAGCAAGCCATAGCATTATCCATGCAA ACTCCCGGACCTGACTCGTCTGTGCGAGACACTGATATGTCAGATGCAACCAATGCAGACCAGGACTTGGCTGCTGCCCTTCAGATGTCCATGCAGGAGG GTGAAAAGGATTCGTCAAACCGAATGGATGAGAGTGAGGTGCTAGAAGACCAAGCCTTTGTGTCATCTGTCCTGGCCTCGCTTCCTGGTGTTGACCCCAA CGACCCTTCTGTTAAAGAACTGCTTGCATCTTTGCATGGAAAATCCGAGTCTGATCAGAAGAAGGATGAAGACAAGTCAGCAAAAGACGACGAGAAGTGA
AA sequence Show only first row Show all	>Lus10034493 pacid=23176132 polypeptide=Lus10034493 locus=Lus10034493.g ID=Lus10034493.BGIv1.0 annot-version=v1.0 MVLEATMICIDNSEWMRNGDYSPSRFQAQADAVSLICGAKTQSNPENTVGILTMAGKGVRVLTTPTTDLGKLLACMHGLDIGGEMNITSAVQIAQLALKH RQNKNQRQRIIVFAGSPIKYDKKVLESIGKKLKKSSVSLDIVDFGEEDDGKPEKLEALLAAVNNNDSSHIVHIPPGPNALSDVLISTPVFTGDGEGGAGF VPAGPAAGGDYDFGVDPNIDPELALALRVSMEEERARQEAAAKRAAEEASTQEKGDGESSKSQDTTMADSATATAAAADSTEPMSEVDALLQQAIALSMQ TPGPDSSVRDTDMSDATNADQDLAAALQMSMQEGEKDSSNRMDESEVLEDQAFVSSVLASLPGVDPNDPSVKELLASLHGKSESDQKKDEDKSAKDDEK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G38630		ATMCB1, MBP1, A...	MULTIUBIQUITIN-CHAIN-BINDING P...		Lus10034493 [exp]	0	1
AT2G14835			RING/U-box superfamily protein...		Lus10012365 [exp]	1.7	0.9202
AT1G20200		HAP15, EMB2719	HAPLESS 15, EMBRYO DEFECTIVE 2...		Lus10027832 [exp]	2.8	0.9152
AT5G09900		RPN5A, MSA, EMB...	REGULATORY PARTICLE NON-ATPASE...		Lus10005804 [exp]	6.5	0.9094
AT1G45000			AAA-type ATPase family protein...		Lus10041964 [exp]	6.7	0.9001
AT1G16300		GAPCP-2	glyceraldehyde-3-phosphate deh...		Lus10009602 [exp]	9.6	0.8890
AT1G75780		TUB1	tubulin beta-1 chain (.1)		Lus10021094 [exp]	14.1	0.8965
AT2G16595			Translocon-associated protein ...		Lus10007577 [exp]	14.3	0.9132
AT2G20420			ATP citrate lyase (ACL) family...		Lus10003620 [exp]	14.7	0.9119
AT3G05530		ATS6A.2, RPT5A	regulatory particle triple-A A...		Lus10031492 [exp]	15.6	0.9056
AT3G26340			N-terminal nucleophile aminohy...		Lus10011369 [exp]	18.8	0.9132

Compare expression of checked genes

Lus10034493 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.