Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G34980 332 / 5e-110 SLP2 subtilisin-like serine protease 2 (.1) AT3G14240 232 / 2e-71 Subtilase family protein (.1) AT5G67360 204 / 2e-61 ARA12 Subtilase family protein (.1) AT3G14067 201 / 5e-60 Subtilase family protein (.1) AT5G51750 190 / 4e-56 ATSBT1.3 subtilase 1.3 (.1) AT2G05920 188 / 2e-55 Subtilase family protein (.1) AT1G01900 167 / 1e-47 SBTI1.1, ATSBT1.1 subtilase family protein (.1) AT1G04110 158 / 1e-44 SDD1 STOMATAL DENSITY AND DISTRIBUTION, Subtilase family protein (.1) AT5G67090 155 / 1e-43 Subtilisin-like serine endopeptidase family protein (.1) AT5G45650 155 / 2e-43 subtilase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025048 [exp] 426 / 2e-153 AT4G34980 313 / 4e-102 subtilisin-like serine protease 2 (.1) Lus10037449 [exp] 211 / 2e-63 AT3G14240 1177 / 0.0 Subtilase family protein (.1) Lus10013187 [exp] 207 / 4e-62 AT3G14240 1175 / 0.0 Subtilase family protein (.1) Lus10007765 [exp] 200 / 1e-59 AT5G67360 990 / 0.0 Subtilase family protein (.1) Lus10033431 [exp] 191 / 4e-56 AT2G05920 1103 / 0.0 Subtilase family protein (.1) Lus10034900 [exp] 190 / 5e-56 AT2G05920 1107 / 0.0 Subtilase family protein (.1) Lus10011089 [exp] 186 / 2e-54 AT5G67360 1108 / 0.0 Subtilase family protein (.1) Lus10013154 [exp] 185 / 3e-54 AT3G14067 915 / 0.0 Subtilase family protein (.1) Lus10002392 [exp] 185 / 4e-54 AT5G67360 530 / 3e-178 Subtilase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G173900 [exp] 345 / 7e-115 AT4G34980 1108 / 0.0 subtilisin-like serine protease 2 (.1) Potri.009G133400 [exp] 340 / 1e-112 AT4G34980 1121 / 0.0 subtilisin-like serine protease 2 (.1) Potri.003G071800 [exp] 243 / 1e-75 AT3G14240 1199 / 0.0 Subtilase family protein (.1) Potri.001G163600 [exp] 240 / 1e-74 AT3G14240 1174 / 0.0 Subtilase family protein (.1) Potri.005G145300 [exp] 214 / 2e-65 AT5G67360 932 / 0.0 Subtilase family protein (.1) Potri.002G120400 [exp] 207 / 3e-62 AT5G67360 966 / 0.0 Subtilase family protein (.1) Potri.014G018900 [exp] 202 / 2e-60 AT5G67360 994 / 0.0 Subtilase family protein (.1) Potri.001G167300 [exp] 195 / 8e-58 AT3G14067 978 / 0.0 Subtilase family protein (.1) Potri.014G074600 [exp] 190 / 4e-56 AT1G01900 788 / 0.0 subtilase family protein (.1) Potri.003G067000 [exp] 190 / 6e-56 AT3G14067 969 / 0.0 Subtilase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0570 [flax] [poplar] PPP-I PF05922 [flax] [poplar] Inhibitor_I9 Peptidase inhibitor I9 CL0570 [flax] [poplar] PF00082 [flax] [poplar] Peptidase_S8 Subtilase family
Representative CDS sequence Show only first row Show all	>Lus10034495 pacid=23175931 polypeptide=Lus10034495 locus=Lus10034495.g ID=Lus10034495.BGIv1.0 annot-version=v1.0 ATGGCGTCGCTTCTCGTTATCCTCCTCCTCATTTCCTTCGCCGCCGGCCATTCAACGGCGTTGAACCCCAAGACCTTCATTTTCCGCGTCGATTCCAACT CCAAACCCTCCGTCTTCCCAACTCACTACCACTGGTACTCCTCTGAGTTCGCTGACCCGCCCCAGATCCTTCACGTCTACGACACCGTCTTCCACGGCTT CTCCGCCGTGTTAGCGCCTGATTATGCCGCCTCGATCGGGAAGCACCCTTCCATCCTTGCTGTATTCGAGGATCACCGGAGGGAGCTTCACACCACCCGA TCCCCTCAATTTCTCGGGCTCAGAAACCAGCAAGGCCTCTGGTCGCAGTCCGACTACGGATCCGACGTCATCATCGGAGTGTTCGACACCGGGGTCTGGC CTGAGCGGAGGTCCTTCTCGGACACGAATCTCGGCCCGGTCCCTTCCCGGTGGAAAGGATACTGCGAGGCTGGAGTTCGGTTCACGGCGAAGAACTGTAA CAAGAAGTTAATCGGAGCTAGGTTCTTCGTCAAAGGGCATGAAGCTGCAGGGTCAGTGGGCCCCATCGGCGGAATTAACGAGACGGTTGAGTTTAGGTCC CCGAGGGACGCCGACGGCCACGGTAACCACACCGCCTCCACCGCCGCCGGGCGGCACCCGGTTAATGCCTCGATCCGATAG
AA sequence Show only first row Show all	>Lus10034495 pacid=23175931 polypeptide=Lus10034495 locus=Lus10034495.g ID=Lus10034495.BGIv1.0 annot-version=v1.0 MASLLVILLLISFAAGHSTALNPKTFIFRVDSNSKPSVFPTHYHWYSSEFADPPQILHVYDTVFHGFSAVLAPDYAASIGKHPSILAVFEDHRRELHTTR SPQFLGLRNQQGLWSQSDYGSDVIIGVFDTGVWPERRSFSDTNLGPVPSRWKGYCEAGVRFTAKNCNKKLIGARFFVKGHEAAGSVGPIGGINETVEFRS PRDADGHGNHTASTAAGRHPVNASIR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G34980		SLP2	subtilisin-like serine proteas...		Lus10034495 [exp]	0	1
AT4G34980		SLP2	subtilisin-like serine proteas...		Lus10034496 [exp]	1.0	0.9455
AT4G34980		SLP2	subtilisin-like serine proteas...		Lus10025048 [exp]	1.4	0.9317
AT2G01820		CYCJ18	Leucine-rich repeat protein ki...		Lus10001851 [exp]	5.5	0.9044
AT5G28740			Tetratricopeptide repeat (TPR)...		Lus10022347 [exp]	7.3	0.9260
AT5G10540			Zincin-like metalloproteases f...		Lus10004276 [exp]	10.8	0.8811
AT2G27810		ATNAT12	ARABIDOPSIS NUCLEOBASE-ASCORBA...		Lus10009402 [exp]	11.2	0.8932
					Lus10009498 [exp]	13.0	0.9170
AT5G57870		eIFiso4G1	eukaryotic translation Initiat...		Lus10022168 [exp]	13.8	0.8766
AT5G11560			catalytics (.1)		Lus10022143 [exp]	16.9	0.9132
AT4G16340		SPK1	SPIKE1, guanyl-nucleotide exch...		Lus10013253 [exp]	16.9	0.9019

Compare expression of checked genes

Lus10034495 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.