Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G34980 637 / 0 SLP2 subtilisin-like serine protease 2 (.1) AT3G14240 459 / 3e-155 Subtilase family protein (.1) AT5G67360 432 / 1e-144 ARA12 Subtilase family protein (.1) AT2G05920 412 / 5e-137 Subtilase family protein (.1) AT5G51750 394 / 6e-130 ATSBT1.3 subtilase 1.3 (.1) AT3G14067 373 / 7e-122 Subtilase family protein (.1) AT2G04160 332 / 4e-106 AIR3 AUXIN-INDUCED IN ROOT CULTURES 3, Subtilisin-like serine endopeptidase family protein (.1) AT1G04110 329 / 6e-105 SDD1 STOMATAL DENSITY AND DISTRIBUTION, Subtilase family protein (.1) AT5G59810 326 / 1e-103 ATSBT5.4 Subtilase family protein (.1) AT1G01900 307 / 1e-96 SBTI1.1, ATSBT1.1 subtilase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013187 [exp] 464 / 7e-157 AT3G14240 1175 / 0.0 Subtilase family protein (.1) Lus10037449 [exp] 456 / 1e-153 AT3G14240 1177 / 0.0 Subtilase family protein (.1) Lus10014853 [exp] 420 / 4e-143 AT5G67360 806 / 0.0 Subtilase family protein (.1) Lus10011089 [exp] 418 / 7e-140 AT5G67360 1108 / 0.0 Subtilase family protein (.1) Lus10007765 [exp] 409 / 7e-136 AT5G67360 990 / 0.0 Subtilase family protein (.1) Lus10018702 [exp] 407 / 4e-135 AT5G67360 607 / 0.0 Subtilase family protein (.1) Lus10034900 [exp] 403 / 2e-133 AT2G05920 1107 / 0.0 Subtilase family protein (.1) Lus10033431 [exp] 402 / 3e-133 AT2G05920 1103 / 0.0 Subtilase family protein (.1) Lus10008116 [exp] 394 / 3e-133 AT3G14067 632 / 0.0 Subtilase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G173900 [exp] 693 / 0 AT4G34980 1108 / 0.0 subtilisin-like serine protease 2 (.1) Potri.009G133400 [exp] 686 / 0 AT4G34980 1121 / 0.0 subtilisin-like serine protease 2 (.1) Potri.001G163600 [exp] 464 / 5e-157 AT3G14240 1174 / 0.0 Subtilase family protein (.1) Potri.003G071800 [exp] 456 / 4e-154 AT3G14240 1199 / 0.0 Subtilase family protein (.1) Potri.002G120400 [exp] 414 / 1e-137 AT5G67360 966 / 0.0 Subtilase family protein (.1) Potri.014G018900 [exp] 411 / 1e-136 AT5G67360 994 / 0.0 Subtilase family protein (.1) Potri.006G141200 [exp] 409 / 9e-136 AT2G05920 1103 / 0.0 Subtilase family protein (.1) Potri.012G131500 [exp] 407 / 5e-135 AT5G51750 1102 / 0.0 subtilase 1.3 (.1) Potri.001G167300 [exp] 402 / 5e-133 AT3G14067 978 / 0.0 Subtilase family protein (.1) Potri.003G067000 [exp] 401 / 8e-133 AT3G14067 969 / 0.0 Subtilase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00082 [flax] [poplar] Peptidase_S8 Subtilase family CL0364 [flax] [poplar] Leu-IlvD PF02225 [flax] [poplar] PA PA domain
Representative CDS sequence Show only first row Show all	>Lus10034496 pacid=23175988 polypeptide=Lus10034496 locus=Lus10034496.g ID=Lus10034496.BGIv1.0 annot-version=v1.0 ATGTCGGTGACAAACCTCGCGCCGTGGATTGCCACTGTCGGTGCGGGGACGATCGACCGGAATTTCCCTGCTGAGGTGGTTTTGGGAGATGGGAGGAAGA TTTCCGGCGTGTCGCTGTACGCTGGAGCTCCGTTGCAGGGGAAAATGTTTCCGGTGGTTTACCCAGGGGAACCAGGGAATCTCTCTGCTTTGTTTCCGGT GGTTTACCCAGGGAAAACAGGGATTCTCTCTGCTTCTCTGTGTATGGAGAATTCCCTGGATCCTGTTGCCGTCAGAGGGAAAATAGTCGTGTGTGACCGT GGGAGCAGTCCTCGAGTGGCGAAAGGGATGGTGGTGAAGAAAGCCGGCGGAGTCGGCATGATTCTGGCTAACGGCGTTTCTAACGGCGAGGGTTTGGTCG GAGATGCTCATCTTCTTCCGACGTGTGCTATAGGTTCAAATCAGGGAGACGCCGTGAAGAAGTACGTGTCTTCGACTCCTAATCCGACGGCGACGTTGAA TTTCCGAGGGACAGTGGTCGGGATCAAGCCGGCGCCGGTTGTCGCTTCGTTCTCCGCCAGAGGACCAAACGGTATGAACCCTGAAATTCTGAAACCCGAT TTGATTGCTCCAGGGGTGAACATACTCGCCGGTTGGACCGACGCCACCGGTCCGACCGGGTTGGCATTGGACACCCGGAAAACCGAGTTCAACATTTTGT CAGGAACTTCAATGGCATGTCCTCATGTGAGCGGAGCTGCTGCTTTGCTCAAATCGGCTCACCCGGATTGGTCACCGGCAGCAATTCGGTCAGCGATGAT GACGACCGCTAACCGGGTTAACAATATGAACGAACCAATGACAGATGAGGCCACTGGAAAGCCATCGACGGCATACGATTTCGGAGCAGGGCATGTGAAT CTCGACTTGGCTATGGATCCGGGGTTGGTTTACGACATTACGAATGACGAGTACGTGAATTACATGTGTGGAGTTGGGTACAGTCCCAAGGCAATCCAGG TAATCACACGTATTCCTGTGAAGTGTCCGGCGAAGAAGGTAATGCCGGAGAATCTGAACTACCCGTCGATGGTTGCTCTGTTCCAAAGCTCGTCTCGTGG ATCTACGAGCAAATCGTTCATCAGAACCGTGACGAATGTAGGCGGAACGAATGCAGTCTACCGATCCAGCGTCGAGGCTCCTAAAGGAGTGAATGTGACG GTGAAGCCGAGGACCCTGTCTTTCGCCGGCGCGGTGAAGAAGAGGAGCTTCATTGTCACGGTCACCGCAGACACCCGTCACTTGGTTTTGGACGATACAG GTGCGGTTTTCGGGTCGGTTTCGTGGTCTGATGGGAAGCATTACGTGAGGAGTCCGATTGTTGTGACGGAATTAGACCCACTGTGA
AA sequence Show only first row Show all	>Lus10034496 pacid=23175988 polypeptide=Lus10034496 locus=Lus10034496.g ID=Lus10034496.BGIv1.0 annot-version=v1.0 MSVTNLAPWIATVGAGTIDRNFPAEVVLGDGRKISGVSLYAGAPLQGKMFPVVYPGEPGNLSALFPVVYPGKTGILSASLCMENSLDPVAVRGKIVVCDR GSSPRVAKGMVVKKAGGVGMILANGVSNGEGLVGDAHLLPTCAIGSNQGDAVKKYVSSTPNPTATLNFRGTVVGIKPAPVVASFSARGPNGMNPEILKPD LIAPGVNILAGWTDATGPTGLALDTRKTEFNILSGTSMACPHVSGAAALLKSAHPDWSPAAIRSAMMTTANRVNNMNEPMTDEATGKPSTAYDFGAGHVN LDLAMDPGLVYDITNDEYVNYMCGVGYSPKAIQVITRIPVKCPAKKVMPENLNYPSMVALFQSSSRGSTSKSFIRTVTNVGGTNAVYRSSVEAPKGVNVT VKPRTLSFAGAVKKRSFIVTVTADTRHLVLDDTGAVFGSVSWSDGKHYVRSPIVVTELDPL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G34980		SLP2	subtilisin-like serine proteas...		Lus10034496 [exp]	0	1
AT4G34980		SLP2	subtilisin-like serine proteas...		Lus10034495 [exp]	1.0	0.9455
AT2G01820		CYCJ18	Leucine-rich repeat protein ki...		Lus10001851 [exp]	2.0	0.9069
AT3G61580		AtSLD1	sphingoid LCB desaturase 1, Fa...		Lus10035482 [exp]	3.0	0.9004
AT5G05520			Outer membrane OMP85 family pr...		Lus10009835 [exp]	8.5	0.8719
AT5G57870		eIFiso4G1	eukaryotic translation Initiat...		Lus10022168 [exp]	10.0	0.8649
AT3G61580		AtSLD1	sphingoid LCB desaturase 1, Fa...		Lus10031102 [exp]	10.9	0.8762
AT2G23140			RING/U-box superfamily protein...		Lus10022919 [exp]	12.2	0.8528
AT4G34980		SLP2	subtilisin-like serine proteas...		Lus10025048 [exp]	12.2	0.8863
AT5G10540			Zincin-like metalloproteases f...		Lus10004276 [exp]	12.5	0.8584
AT3G26935			DHHC-type zinc finger family p...		Lus10000146 [exp]	14.5	0.8487

Compare expression of checked genes

Lus10034496 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.