Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G01580 330 / 2e-103 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT5G39350 319 / 4e-99 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G16610 318 / 4e-99 pentatricopeptide (PPR) repeat-containing protein (.1) AT1G11290 321 / 1e-98 CRR22 CHLORORESPIRATORY REDUCTION22, Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G15510 322 / 3e-98 VAC1, ATECB2 VANILLA CREAM 1, ARABIDOPSIS EARLY CHLOROPLAST BIOGENESIS2, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT4G13650 325 / 5e-98 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT3G49740 313 / 4e-96 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G03580 316 / 6e-96 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G16480 315 / 2e-95 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) AT3G53360 312 / 2e-95 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025047 [exp] 475 / 4e-163 AT5G13230 187 / 2e-52 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10036071 [exp] 335 / 9e-104 AT1G18485 464 / 5e-151 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10026460 [exp] 337 / 1e-103 AT1G15510 1030 / 0.0 VANILLA CREAM 1, ARABIDOPSIS EARLY CHLOROPLAST BIOGENESIS2, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10017446 [exp] 334 / 4e-103 AT1G11290 1152 / 0.0 CHLORORESPIRATORY REDUCTION22, Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10025009 [exp] 329 / 2e-101 AT1G15510 1020 / 0.0 VANILLA CREAM 1, ARABIDOPSIS EARLY CHLOROPLAST BIOGENESIS2, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10022890 [exp] 327 / 8e-101 AT3G61170 865 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10024936 [exp] 322 / 5e-99 AT3G61170 855 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10035164 [exp] 317 / 7e-97 AT3G02010 962 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10031994 [exp] 314 / 8e-96 AT3G02010 957 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G058700 [exp] 364 / 3e-114 AT1G15510 1113 / 0.0 VANILLA CREAM 1, ARABIDOPSIS EARLY CHLOROPLAST BIOGENESIS2, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.009G067000 [exp] 347 / 2e-108 AT1G18485 500 / 8e-164 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.004G047800 [exp] 344 / 5e-106 AT4G13650 654 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.003G164900 [exp] 335 / 8e-104 AT5G13230 950 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.002G155100 [exp] 333 / 5e-103 AT3G61170 933 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.008G052200 [exp] 331 / 1e-101 AT2G39620 816 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.013G058900 [exp] 333 / 6e-101 AT4G13650 1282 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.015G047600 [exp] 332 / 6e-101 AT1G18485 1077 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.003G006800 [exp] 326 / 2e-100 AT3G16610 687 / 0.0 pentatricopeptide (PPR) repeat-containing protein (.1) Potri.007G021700 [exp] 321 / 2e-99 AT3G47840 796 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF01535 [flax] [poplar] PPR PPR repeat
Representative CDS sequence Show only first row Show all	>Lus10034497 pacid=23175920 polypeptide=Lus10034497 locus=Lus10034497.g ID=Lus10034497.BGIv1.0 annot-version=v1.0 ATGGGCCTCAATTTCACACGGCCCAAAAACCTTTTATATTTTACCGGGGATAGACGGATACCCGCCCTTCATCACTGCAGTCTGCAGCGCGGTAATTTCA ACCGAAAAGCTAACCGTAAACGATGCAGCAGAATTCTTCTCATGAATTCAATTTCAAAGCTTGTCCAAAGCTACCCATTTACTCTTCCCCTTCCCCGCTA CTTCTCCACGTCATCCCGGATTCAAGCTTCCCGCCATGAAGTACTTAATTCCACCAATCACTTGAGCTCGCATTTCAAATCGGGAAGAGTTTCTGATGCG GAGAAGCTGTTCGATGAAATGTCCGACCGAAACATTGTATCCTGGTCCATTGTTATTCATGGCTACGCCATTAACGGGTTTCACGTGAAATCAATGAACA TGTTCTCCCGGATGCGTCACTCCGGCTTGGTTCCGAATTCTTTCTCTATGGTGGGCGTTCTTGTCTGTGCTGCCGGTTTTGGTGACTTGAAGCTTGGCAG GTATATCCATGGGGTTGTTGTGAAAAGTGGGTTACAGTCTGATTTGTTCGTTGCGACAGCCGCGATTAACATGTATGCGAAATGTGGGGATGTGTTGGAT TGTTATAAAGTGTTTTGGGAAATGAAGAGTTTGGATTTGGTTCCGTGCAATGCTGTTATAGCAGGATTTGTTGCCAATGGGCTATACAGCGAAAGCTTTG AGCTTTTTCAAAAGTTTAGGAAGGGTGGTTTTGTACCAAATTCGTCTACTATGTTGACTCTTATGAGGGGTTGTGTCGGTTTAGGGTTTAGGATGCTTGC TGATTCTTTTCATGGTCTAGTCATTAAGCTCTGGCTTGAATCGGATTCTCCTGTAAAAAATGCAGTCATTGGCATGTACTCAAGTTTCTTGGACATCACT GCAGCTGGGAAAGCTTTTCAGGAGGTGGAATGCAAAGATATTATCAGTTGGTCCACAATGATGGGTTTATTGGTTGACCTTGAAGATGCTTCTGGAGCTC TAAGACTCTACACTGATATGAGGAGCAATGGGGTCAATGTTGATGCAGTAGTAATAGTGCATCTTATCTTGGCTACTGGTGTTTTAGGTCAAGTGAATAT GGGAAAGGAAATCCATGCTCTGGCTATCGTCAGTGGGTTTATGTCGCAGCTTCCTGTTACGAATTCGCTCATTACAATGTACCTGAAGAATGGCGATCTT GATTCATCAAGAACAGTTTTTCATCAAACACCTGACAAGAGTCCAGTTACATGGACAGCTATGATTTCAGGACTCACGAACAATGGTCACGCAAAAGCTG CTTTGGGTCTGATGAGCAAGGCCAGATGGGAGCAAAATTATTCCCTAGATTCTGTATCATTGCTCAGCTGTATAATTGCTTGTGGCGAGATTGCAGCTTT GGAGTTCTGCCAGCAGCTTCATTGCCATGCCTTCAAAATGGGATATGCGTACCATGTGTTAACTTCAAATAGTCTAATATCAGCATATTCGAGATGTGGG AATGTCGATCTCGCTAATATTGTCTTCCAGAACATGGGTTCTCTTCGTAATGTAGCGTCATGGAATGCCATCATATCCGGATATGGTGTTAATGGCCATG GCGAATTTGCTGTTCGACTTTACCGTGATATGATGAAGGAAAATGAAGACCCTGACAGCACAACTTACTTGGCTGTTCTGAATGCTTGCAGTCATTCAGG ATTGGTAGCTGATGGTCTGAAGATATTCAATAAAATGATAGAGAATAGAAAAGTGATCCCAAAGCAAGAGCATCTCGGGTGCGTGATAGACTTGCTGATT CGAGCAGGGTACTTAGATGATGCGAGTGCGCTTGCTGCGATGCTTCCTCAAGAACTGAGTCCAAATGTCTGGAAAACTTTACTTGGTGGATGTGCTGTTC ATGGTAATCTGCAGGTAGCGGAACATGCTGCAAAGAATGTATCAATGGAACAGGAATCAGGTGAAGAAGTGTTGCTTCTGTCGAATGCATATGCATCAGT AGGGAGGTTTGAAGATGCCGAAGCATTGAGATTGAGCATTCAGGACAAAGGATTCATTAAGGATCCTGGTTTCAGCCTTGTGAAAGGTATGGATTATGAT CGTGGGTGA
AA sequence Show only first row Show all	>Lus10034497 pacid=23175920 polypeptide=Lus10034497 locus=Lus10034497.g ID=Lus10034497.BGIv1.0 annot-version=v1.0 MGLNFTRPKNLLYFTGDRRIPALHHCSLQRGNFNRKANRKRCSRILLMNSISKLVQSYPFTLPLPRYFSTSSRIQASRHEVLNSTNHLSSHFKSGRVSDA EKLFDEMSDRNIVSWSIVIHGYAINGFHVKSMNMFSRMRHSGLVPNSFSMVGVLVCAAGFGDLKLGRYIHGVVVKSGLQSDLFVATAAINMYAKCGDVLD CYKVFWEMKSLDLVPCNAVIAGFVANGLYSESFELFQKFRKGGFVPNSSTMLTLMRGCVGLGFRMLADSFHGLVIKLWLESDSPVKNAVIGMYSSFLDIT AAGKAFQEVECKDIISWSTMMGLLVDLEDASGALRLYTDMRSNGVNVDAVVIVHLILATGVLGQVNMGKEIHALAIVSGFMSQLPVTNSLITMYLKNGDL DSSRTVFHQTPDKSPVTWTAMISGLTNNGHAKAALGLMSKARWEQNYSLDSVSLLSCIIACGEIAALEFCQQLHCHAFKMGYAYHVLTSNSLISAYSRCG NVDLANIVFQNMGSLRNVASWNAIISGYGVNGHGEFAVRLYRDMMKENEDPDSTTYLAVLNACSHSGLVADGLKIFNKMIENRKVIPKQEHLGCVIDLLI RAGYLDDASALAAMLPQELSPNVWKTLLGGCAVHGNLQVAEHAAKNVSMEQESGEEVLLLSNAYASVGRFEDAEALRLSIQDKGFIKDPGFSLVKGMDYD RG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G01580			Tetratricopeptide repeat (TPR)...		Lus10034497 [exp]	0	1
AT5G26680			5'-3' exonuclease family prote...		Lus10000270 [exp]	6.6	0.7940
AT2G40430			unknown protein		Lus10037530 [exp]	12.1	0.7779
AT3G57050		CBL	cystathionine beta-lyase (.1.2...		Lus10027313 [exp]	13.0	0.7490
AT1G79050			recA DNA recombination family ...		Lus10042462 [exp]	14.1	0.7163
AT4G33800			unknown protein		Lus10033772 [exp]	19.0	0.7083
AT5G27540		MIRO1, EMB2473	embryo defective 2473, MIRO-re...		Lus10031508 [exp]	19.8	0.7103
AT3G21540			transducin family protein / WD...		Lus10023903 [exp]	20.0	0.7610
AT3G57170			N-acetylglucosaminyl transfera...		Lus10033869 [exp]	27.8	0.7500
AT5G15550			Transducin/WD40 repeat-like su...		Lus10032344 [exp]	47.4	0.7252
AT1G21750		ATPDI5, ATPDIL1...	ARABIDOPSIS THALIANA PROTEIN D...		Lus10042721 [exp]	47.4	0.6574

Compare expression of checked genes

Lus10034497 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.