Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G17840 283 / 2e-94 ERD7 EARLY-RESPONSIVE TO DEHYDRATION 7, Senescence/dehydration-associated protein-related (.1) AT4G35985 279 / 9e-93 Senescence/dehydration-associated protein-related (.1) AT3G51250 278 / 4e-92 Senescence/dehydration-associated protein-related (.1) AT4G15450 155 / 2e-45 Senescence/dehydration-associated protein-related (.1) AT3G21600 128 / 3e-35 Senescence/dehydration-associated protein-related (.1.2) AT3G21590 73 / 9e-16 Senescence/dehydration-associated protein-related (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014132 [exp] 397 / 2e-139 AT2G17840 476 / 1e-166 EARLY-RESPONSIVE TO DEHYDRATION 7, Senescence/dehydration-associated protein-related (.1) Lus10027840 [exp] 342 / 4e-115 AT2G17840 489 / 4e-169 EARLY-RESPONSIVE TO DEHYDRATION 7, Senescence/dehydration-associated protein-related (.1) Lus10005067 [exp] 278 / 3e-92 AT2G17840 459 / 5e-160 EARLY-RESPONSIVE TO DEHYDRATION 7, Senescence/dehydration-associated protein-related (.1) Lus10028439 [exp] 261 / 2e-85 AT3G51250 520 / 0.0 Senescence/dehydration-associated protein-related (.1) Lus10041892 [exp] 159 / 3e-47 AT3G51250 358 / 9e-122 Senescence/dehydration-associated protein-related (.1) Lus10043028 [exp] 146 / 5e-42 AT4G15450 373 / 3e-128 Senescence/dehydration-associated protein-related (.1) Lus10011127 [exp] 145 / 1e-41 AT4G15450 382 / 8e-132 Senescence/dehydration-associated protein-related (.1) Lus10012957 [exp] 142 / 5e-41 AT4G15450 321 / 1e-108 Senescence/dehydration-associated protein-related (.1) Lus10034970 [exp] 51 / 2e-07 AT4G15450 178 / 1e-53 Senescence/dehydration-associated protein-related (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G133500 [exp] 326 / 1e-111 AT2G17840 449 / 1e-156 EARLY-RESPONSIVE TO DEHYDRATION 7, Senescence/dehydration-associated protein-related (.1) Potri.004G174100 [exp] 322 / 7e-110 AT2G17840 472 / 7e-165 EARLY-RESPONSIVE TO DEHYDRATION 7, Senescence/dehydration-associated protein-related (.1) Potri.005G111600 [exp] 298 / 6e-100 AT2G17840 491 / 3e-172 EARLY-RESPONSIVE TO DEHYDRATION 7, Senescence/dehydration-associated protein-related (.1) Potri.018G087500 [exp] 151 / 8e-44 AT4G15450 401 / 5e-139 Senescence/dehydration-associated protein-related (.1) Potri.006G164748 [exp] 142 / 2e-40 AT4G15450 332 / 3e-112 Senescence/dehydration-associated protein-related (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF06911 [flax] [poplar] Senescence Senescence-associated protein
Representative CDS sequence Show only first row Show all	>Lus10034499 pacid=23176110 polypeptide=Lus10034499 locus=Lus10034499.g ID=Lus10034499.BGIv1.0 annot-version=v1.0 ATGATGAAGGAGAGTTCTGCTGCTTATTGGACTGTTTTAGCTCCTAATGTTGAGGATTACAGCAGCTCGTTGGCTAGGATGATTGCTTCTGGATCGGGGC ATGTGATTAAGGGGATCTTGTGGTGTGGGGATGTGACTACCGATAGGTTGAAGTGGGGGAATGGATTTTTGATGAAGAGGATCAAGAAGGGTGAAAATGC TGAAGTCAGTCCTGCTACATTGAGAAGGATCAAAAGAGCTAAGAGACTGACTAAAATGTCCGAGAAAGTGGCGGTTGGGATCCTCTCCGGAGCAGTCAAA GTTTCTGGATCCCTGGCAAGTCCGATCGTGAACTCTAAAGCTGGAAAGAAATTCTTCGGCATTTTGCCTGGAGAACTCATCCTTGCTTCCTTGGATGGAT TCAACAAGATTTGCGATGCATTTGAACATGCTGGAAAGAATGTCATGTCAACCTCGTCAGAAGTGACAACTGGTCTCGTCTCACACAAGTATGGAGAGGA AGCTGGAAAGGCGACGAACGAAGGGCTTGACGCTGCAGGGCACGCGATAGGGACTGCCTGGGCTGTAATGAAGTTAAGGAAGGCTTTAAACCCAAAGAGT GCGTTGAAGCCATCATCTATAGCAAAGGCAGCTGCAAAGGCAAGTGCTGCTGATCTGAAATCCAAGTCCGCAAAGTAA
AA sequence Show only first row Show all	>Lus10034499 pacid=23176110 polypeptide=Lus10034499 locus=Lus10034499.g ID=Lus10034499.BGIv1.0 annot-version=v1.0 MMKESSAAYWTVLAPNVEDYSSSLARMIASGSGHVIKGILWCGDVTTDRLKWGNGFLMKRIKKGENAEVSPATLRRIKRAKRLTKMSEKVAVGILSGAVK VSGSLASPIVNSKAGKKFFGILPGELILASLDGFNKICDAFEHAGKNVMSTSSEVTTGLVSHKYGEEAGKATNEGLDAAGHAIGTAWAVMKLRKALNPKS ALKPSSIAKAAAKASAADLKSKSAK

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G17840		ERD7	EARLY-RESPONSIVE TO DEHYDRATIO...		Lus10034499 [exp]	0	1
AT2G17840		ERD7	EARLY-RESPONSIVE TO DEHYDRATIO...		Lus10014132 [exp]	1.4	0.9326
AT3G22970			Protein of unknown function (D...		Lus10003087 [exp]	2.8	0.8805
AT5G62140			unknown protein		Lus10015008 [exp]	5.1	0.9049
AT3G61460		BRH1	brassinosteroid-responsive RIN...		Lus10036378 [exp]	5.5	0.8984
AT3G56880			VQ motif-containing protein (....		Lus10012292 [exp]	8.4	0.8579
AT3G61460		BRH1	brassinosteroid-responsive RIN...		Lus10014758 [exp]	8.8	0.8740
AT4G30440		GAE1	UDP-D-glucuronate 4-epimerase ...		Lus10015496 [exp]	10.0	0.8772
AT4G14540	CCAAT	NF-YB3	"nuclear factor Y, subunit B3"...		Lus10022514 [exp]	10.8	0.8542
AT4G09810			Nucleotide-sugar transporter f...		Lus10020837 [exp]	11.7	0.8321
AT1G19910		AVA-2PE, ATVHA-...	VACUOLAR-TYPE H+ ATPASE C2, AT...		Lus10041819 [exp]	12.0	0.8576

Compare expression of checked genes

Lus10034499 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.