Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G44770 265 / 6e-89 unknown protein AT4G24590 63 / 1e-11 unknown protein AT5G49710 61 / 6e-11 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014131 [exp] 475 / 5e-172 AT1G44770 295 / 6e-101 unknown protein Lus10015965 [exp] 56 / 7e-09 AT5G49710 274 / 2e-93 unknown protein Lus10000765 [exp] 44 / 5e-05 AT5G49710 261 / 3e-88 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G176500 [exp] 311 / 4e-107 AT1G44770 247 / 5e-82 unknown protein Potri.002G084900 [exp] 294 / 2e-100 AT1G44770 234 / 7e-77 unknown protein Potri.002G104200 [exp] 61 / 7e-11 AT5G49710 263 / 8e-89 unknown protein Potri.005G157500 [exp] 58 / 7e-10 AT5G49710 242 / 7e-81 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10034500 pacid=23176121 polypeptide=Lus10034500 locus=Lus10034500.g ID=Lus10034500.BGIv1.0 annot-version=v1.0 ATGGGAGGTCCCAAAGCTGCGATTGAAGTGGCAAAGACGGTTATCGAGGTGGCTGACGCAGCATGGACTGCCATGGAGTTCGGCCATCACCACCTCCATC ACCATGGCGATCACAAGGCCGCCGCGGAACCGCTGTCTTTAGATGAAGAGATGGAGTGCGTAAGAGCCGAGAATCGGCGGTTGAAGAGTTTACTCGAGCA TAATCTCAAACTACTTCAGAATTTGGCTGAATCGCCTCGATTGATGAACGATTGCCCTCCTGATCTATATGCTCGCCTTGCTGCTACTGTGGATTCTGAA AAATTCTTGGGTCAGCTTAAAACCCTTCAAGAGGAAGCCAGAAATGGAGTTACCCCTGGTTTCCCTTTCAAGGAGCCATCAGGTGACGACTTAGAAGTTC TAATTAAGATTGACCAAGAAGAGCCTAGTCGGTGGGTATGGGTTACTGAAGAAATGGTTCATGGCAATGTTGAGGAACACAGTGGGATTGATAACGAGTC TTACGTTGTTATCAACGAGAATCAGGTGGTTGATGCTGTAGCTACGTTTATGGCCAACTGCATCACTGCAAACCCAAAATCTCAGAAGCTTTCTCCTGAG GATCTCCAGAAAGCCGTCACAGAAGCTTTGGCTGGTGGATCTAGCAAGTTCGAGAGAGCCATTGGTATTTGGCATGCTGGGCAGCTGTTTTACGCACTTT CTACGTGGGGACTTGCATTGGTTGGACTGTACAGAACTCGTGCTGTGCTGAAAGTTGCCGCCATGGGCATTCATTCTACAAGCAAAGTCGTCCTCAGAGC TTTGTGA
AA sequence Show only first row Show all	>Lus10034500 pacid=23176121 polypeptide=Lus10034500 locus=Lus10034500.g ID=Lus10034500.BGIv1.0 annot-version=v1.0 MGGPKAAIEVAKTVIEVADAAWTAMEFGHHHLHHHGDHKAAAEPLSLDEEMECVRAENRRLKSLLEHNLKLLQNLAESPRLMNDCPPDLYARLAATVDSE KFLGQLKTLQEEARNGVTPGFPFKEPSGDDLEVLIKIDQEEPSRWVWVTEEMVHGNVEEHSGIDNESYVVINENQVVDAVATFMANCITANPKSQKLSPE DLQKAVTEALAGGSSKFERAIGIWHAGQLFYALSTWGLALVGLYRTRAVLKVAAMGIHSTSKVVLRAL

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G44770			unknown protein		Lus10034500 [exp]	0	1
AT5G49710			unknown protein		Lus10015965 [exp]	1.0	0.9741
AT4G30340		ATDGK7	diacylglycerol kinase 7 (.1)		Lus10015514 [exp]	2.6	0.9621
AT5G61500		ATATG3	autophagy 3 (APG3) (.1)		Lus10009664 [exp]	2.8	0.9607
AT3G26100			Regulator of chromosome conden...		Lus10036945 [exp]	2.8	0.9707
AT5G54840		ATSGP1	Ras-related small GTP-binding ...		Lus10040044 [exp]	3.9	0.9544
AT1G04970			lipid-binding serum glycoprote...		Lus10033808 [exp]	5.0	0.9671
AT3G57870		SCE1A, SCE1, AH...	SUMO CONJUGATING ENZYME 1A, EM...		Lus10009376 [exp]	5.2	0.9586
AT1G21000			PLATZ transcription factor fam...		Lus10002700 [exp]	5.2	0.9677
AT1G14720		ATXTH28, EXGT-A...	xyloglucan endotransglycosylas...		Lus10030760 [exp]	5.7	0.9460
AT4G16520		ATG8F	autophagy 8f, Ubiquitin-like s...		Lus10000733 [exp]	6.0	0.9656

Compare expression of checked genes

Lus10034500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.