Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G18340 321 / 3e-109 basal transcription factor complex subunit-related (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G176600 [exp] 360 / 8e-125 AT1G18340 374 / 5e-131 basal transcription factor complex subunit-related (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0128 [flax] [poplar] vWA-like PF03850 [flax] [poplar] Tfb4 Transcription factor Tfb4
Representative CDS sequence Show only first row Show all	>Lus10034501 pacid=23176001 polypeptide=Lus10034501 locus=Lus10034501.g ID=Lus10034501.BGIv1.0 annot-version=v1.0 ATGGTAGGAATATTATTTACGGAAAGTGTCTGCGTTCCCGACTCTACTGAAATCCTAGTCGCGAATTGGTTTAGCCGATCGCTAATTTGGAAGGTTTTCA ACCTTCGAGACGGAACATTGAAGTTCGAGTCAACACATTCCGAAGCAGTTTGCGCTCTTTCGTTAGAGAACGAGAAATTGGCAGATGATGTTAGCCTTGT GGTGGTTCTGATAGACACCAATCCGTTCTTCTGGAGCACGTCACCTTCTCTATCTCTCCACCAGTTCCTCTCCCATGTGTTGGCATTTCTTAATTCGGTT GTGCTGCTGAATCAGCTGAACCAGATCGTGGTCATTGCGACGGGGCATAATTCATGTGACTATGTTTATGACTCATCCTTGGATTTGGATCAACTGGTCT CCGGGAATGGAGAATCGCCTGCGTTTTACACTGTTTTGTTGCAGAGACTGGCGGAGTTTGTGAGTAAGGATGAGGCTTTGGCAAAGCAGGATGATTCCCC CGAAAAGAGGGCGTCTTCGTTGCTGTCTGGATCACTGTCAATGGCCCTTTGTTATATACAAAGGGTTTTCCGATCAGGGCCGCTCCATCCAAAGCCTCGA ATTCTGTGCTTGCAGGGATCTCCCGATGGATCTGAACAATATGTGTCAGTGATGAATGCAATCTTCTCCGCCCAGCGCTCAACGGTGCCGATAGATTGTT GTTACGTAGGTTCTCATAATTCTGCTTTCTTACAGCAGGCTTCTTACATCACTGGTGGTGTATATGTTAAGCCCCAACATTTGGATGGGCTGTTCCAGTA TTTAGTGACTGTGTTTGCAGTTGATTTGCATTCGCGAGACTTCTTACAACTGCCAAGGCCAGCTGGTGTAGATTTCCGTGCCTCATGCTTTTGCCATAAA ACAACTATCGATATGGGCTATGTATGTTCTGTTTGCTTGTCCATTTTCTGTCAGTATTTGGTCAGGCCCAGACAGATGCTTCCATTGCCTCAGATCGGAA GAGAAAAGCCCCCGAAACGTAACTGTTTGGTTAGCTAG
AA sequence Show only first row Show all	>Lus10034501 pacid=23176001 polypeptide=Lus10034501 locus=Lus10034501.g ID=Lus10034501.BGIv1.0 annot-version=v1.0 MVGILFTESVCVPDSTEILVANWFSRSLIWKVFNLRDGTLKFESTHSEAVCALSLENEKLADDVSLVVVLIDTNPFFWSTSPSLSLHQFLSHVLAFLNSV VLLNQLNQIVVIATGHNSCDYVYDSSLDLDQLVSGNGESPAFYTVLLQRLAEFVSKDEALAKQDDSPEKRASSLLSGSLSMALCYIQRVFRSGPLHPKPR ILCLQGSPDGSEQYVSVMNAIFSAQRSTVPIDCCYVGSHNSAFLQQASYITGGVYVKPQHLDGLFQYLVTVFAVDLHSRDFLQLPRPAGVDFRASCFCHK TTIDMGYVCSVCLSIFCQYLVRPRQMLPLPQIGREKPPKRNCLVS

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G18340			basal transcription factor com...		Lus10034501 [exp]	0	1
AT4G18950			Integrin-linked protein kinase...		Lus10002765 [exp]	29.8	0.5586
AT3G11620		BAS1	alpha/beta-Hydrolases superfam...		Lus10016975 [exp]	50.1	0.5454
AT1G22460			O-fucosyltransferase family pr...		Lus10033494 [exp]	52.9	0.5444
AT5G43900		XI-6, XI-2, ATM...	MYOSIN XI-6, MYOSIN X1 2, ARAB...		Lus10000260 [exp]	72.1	0.5130

Compare expression of checked genes

Lus10034501 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.