Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G65410 62 / 8e-13 ZF_HD ATHB25, ZFHD2, ZHD1 ZINC FINGER HOMEODOMAIN 1, ZINC FINGER HOMEODOMAIN 2, ARABIDOPSIS THALIANA HOMEOBOX PROTEIN 25, homeobox protein 25 (.1) AT3G28920 59 / 8e-12 ZF_HD ATHB34, ZHD9 ZINC FINGER HOMEODOMAIN 9, homeobox protein 34 (.1) AT4G24660 58 / 1e-11 ZF_HD ATHB22, MEE68, ZHD2 ZINC FINGER HOMEODOMAIN 2, MATERNAL EFFECT EMBRYO ARREST 68, homeobox protein 22 (.1) AT5G15210 57 / 4e-11 ZF_HD ATHB30, ZFHD3, ZHD8 ZINC FINGER HOMEODOMAIN 8, ZINC FINGER HOMEODOMAIN 3, homeobox protein 30 (.1) AT1G75240 56 / 1e-10 ZF_HD ATHB33, ZHD5 zinc-finger homeodomain 5, homeobox protein 33 (.1) AT5G39760 56 / 1e-10 ZF_HD ATHB23, ZHD10 ZINC FINGER HOMEODOMAIN 10, homeobox protein 23 (.1) AT5G60480 54 / 3e-10 ZF_HD ATHB26, ZHD12 ZINC FINGER HOMEODOMAIN 12, homeobox protein 26 (.1) AT1G69600 54 / 4e-10 ZF_HD ATHB29, ZFHD1, ZHD11 ZINC FINGER HOMEODOMAIN 11, ARABIDOPSIS THALIANA HOMEOBOX PROTEIN 29, zinc finger homeodomain 1 (.1) AT1G14440 54 / 5e-10 ZF_HD ATHB31, ZHD4 ZINC FINGER HOMEODOMAIN 4, homeobox protein 31 (.1.2) AT2G02540 53 / 1e-09 ZF_HD ATHB21, ZFHD4, ZHD3 ZINC FINGER HOMEODOMAIN 3, ZINC FINGER HOMEODOMAIN 4, homeobox protein 21 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037175 [exp] 100 / 6e-28 AT1G75240 86 / 2e-20 zinc-finger homeodomain 5, homeobox protein 33 (.1) Lus10012827 [exp] 81 / 1e-20 AT3G28920 91 / 6e-22 ZINC FINGER HOMEODOMAIN 9, homeobox protein 34 (.1) Lus10030473 [exp] 62 / 8e-14 AT5G39760 65 / 3e-13 ZINC FINGER HOMEODOMAIN 10, homeobox protein 23 (.1) Lus10007147 [exp] 57 / 3e-11 AT2G18350 222 / 1e-70 ZINC FINGER HOMEODOMAIN 6, homeobox protein 24 (.1) Lus10014302 [exp] 56 / 1e-10 AT1G75240 176 / 9e-54 zinc-finger homeodomain 5, homeobox protein 33 (.1) Lus10015900 [exp] 54 / 2e-10 AT4G24660 145 / 6e-44 ZINC FINGER HOMEODOMAIN 2, MATERNAL EFFECT EMBRYO ARREST 68, homeobox protein 22 (.1) Lus10005242 [exp] 55 / 3e-10 AT5G39760 218 / 9e-69 ZINC FINGER HOMEODOMAIN 10, homeobox protein 23 (.1) Lus10005244 [exp] 54 / 3e-10 AT5G39760 142 / 1e-41 ZINC FINGER HOMEODOMAIN 10, homeobox protein 23 (.1) Lus10031315 [exp] 54 / 3e-10 AT1G75240 137 / 9e-40 zinc-finger homeodomain 5, homeobox protein 33 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G169400 [exp] 72 / 2e-16 AT1G69600 152 / 2e-44 ZINC FINGER HOMEODOMAIN 11, ARABIDOPSIS THALIANA HOMEOBOX PROTEIN 29, zinc finger homeodomain 1 (.1) Potri.015G032700 [exp] 65 / 2e-14 AT1G69600 137 / 2e-40 ZINC FINGER HOMEODOMAIN 11, ARABIDOPSIS THALIANA HOMEOBOX PROTEIN 29, zinc finger homeodomain 1 (.1) Potri.012G040900 [exp] 64 / 6e-14 AT4G24660 143 / 4e-43 ZINC FINGER HOMEODOMAIN 2, MATERNAL EFFECT EMBRYO ARREST 68, homeobox protein 22 (.1) Potri.008G086000 [exp] 65 / 7e-14 AT5G15210 167 / 8e-50 ZINC FINGER HOMEODOMAIN 8, ZINC FINGER HOMEODOMAIN 3, homeobox protein 30 (.1) Potri.017G082900 [exp] 59 / 6e-12 AT3G28920 215 / 8e-68 ZINC FINGER HOMEODOMAIN 9, homeobox protein 34 (.1) Potri.007G024100 [exp] 57 / 3e-11 AT1G75240 186 / 2e-56 zinc-finger homeodomain 5, homeobox protein 33 (.1) Potri.003G000400 [exp] 57 / 6e-11 AT1G14440 238 / 9e-78 ZINC FINGER HOMEODOMAIN 4, homeobox protein 31 (.1.2) Potri.002G102900 [exp] 56 / 1e-10 AT4G24660 209 / 9e-68 ZINC FINGER HOMEODOMAIN 2, MATERNAL EFFECT EMBRYO ARREST 68, homeobox protein 22 (.1) Potri.002G035200 [exp] 56 / 1e-10 AT1G14440 169 / 2e-50 ZINC FINGER HOMEODOMAIN 4, homeobox protein 31 (.1.2) Potri.005G158800 [exp] 55 / 1e-10 AT4G24660 204 / 1e-65 ZINC FINGER HOMEODOMAIN 2, MATERNAL EFFECT EMBRYO ARREST 68, homeobox protein 22 (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10034503 pacid=23162766 polypeptide=Lus10034503 locus=Lus10034503.g ID=Lus10034503.BGIv1.0 annot-version=v1.0 ATGGTTATGATGAGTTCGAATTTAGGAGGGAGGAAAATGGAGAGGACTAAATTTACTTCCAAGCAGAAGGTGAAGATGTACGATGTTGCAGAGAGGCTAG GGTGGAAGATGGTGAGGGCGAATGAGGATAAGATTGTGGAGAATTTCTGCAGCGAGAATGGCATTTGGAGGAATGTGTTCAAAGTCGGATGCACAACAAT AAGCACCGTAAGGACAAACTCGACATCGGCGGCGAAAGCGAAAGCGGTGGCTTAA
AA sequence Show only first row Show all	>Lus10034503 pacid=23162766 polypeptide=Lus10034503 locus=Lus10034503.g ID=Lus10034503.BGIv1.0 annot-version=v1.0 MVMMSSNLGGRKMERTKFTSKQKVKMYDVAERLGWKMVRANEDKIVENFCSENGIWRNVFKVGCTTISTVRTNSTSAAKAKAVA

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G28920	ZF_HD	ATHB34, ZHD9	ZINC FINGER HOMEODOMAIN 9, hom...		Lus10034503 [exp]	0	1
AT1G23740		AOR	alkenal/one oxidoreductase, Ox...		Lus10030873 [exp]	4.2	0.9061
AT5G51110			Transcriptional coactivator/pt...		Lus10014182 [exp]	5.3	0.9014
AT5G07020			proline-rich family protein (....		Lus10024125 [exp]	13.9	0.9007
AT5G01920		STN8	State transition 8, Protein ki...		Lus10022730 [exp]	14.7	0.8913
AT5G07020			proline-rich family protein (....		Lus10005388 [exp]	19.4	0.8906
AT5G38420			Ribulose bisphosphate carboxyl...		Lus10028471 [exp]	19.7	0.8756
AT1G20340		PETE2, DRT112	PLASTOCYANIN 2, DNA-DAMAGE-REP...		Lus10034554 [exp]	21.9	0.8789
AT5G58330			lactate/malate dehydrogenase f...		Lus10037935 [exp]	22.6	0.8794
AT5G51110			Transcriptional coactivator/pt...		Lus10022731 [exp]	23.4	0.8870
AT4G32590			2Fe-2S ferredoxin-like superfa...		Lus10041038 [exp]	25.9	0.8800

Compare expression of checked genes

Lus10034503 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.