Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G31500 449 / 3e-154 SUR2, RNT1, RED1, ATR4, CYP83B1 SUPERROOT 2, RUNT 1, RED ELONGATED 1, "cytochrome P450, family 83, subfamily B, polypeptide 1", ALTERED TRYPTOPHAN REGULATION 4, cytochrome P450, family 83, subfamily B, polypeptide 1 (.1) AT3G26320 389 / 8e-131 CYP71B36 "cytochrome P450, family 71, subfamily B, polypeptide 36", cytochrome P450, family 71, subfamily B, polypeptide 36 (.1) AT4G13770 386 / 2e-129 REF2, CYP83A1 REDUCED EPIDERMAL FLUORESCENCE 2, "cytochrome P450, family 83, subfamily A, polypeptide 1", cytochrome P450, family 83, subfamily A, polypeptide 1 (.1) AT3G26330 384 / 2e-128 CYP71B37 "cytochrome P450, family 71, subfamily B, polypeptide 37", cytochrome P450, family 71, subfamily B, polypeptide 37 (.1) AT3G26300 380 / 6e-127 CYP71B34 "cytochrome P450, family 71, subfamily B, polypeptide 34", cytochrome P450, family 71, subfamily B, polypeptide 34 (.1) AT5G57260 373 / 2e-124 CYP71B10 "cytochrome P450, family 71, subfamily B, polypeptide 10", cytochrome P450, family 71, subfamily B, polypeptide 10 (.1) AT3G26310 373 / 2e-124 CYP71B35 "cytochrome P450, family 71, subfamily B, polypeptide 35", cytochrome P450, family 71, subfamily B, polypeptide 35 (.1) AT5G25180 361 / 6e-120 CYP71B14 "cytochrome P450, family 71, subfamily B, polypeptide 14", cytochrome P450, family 71, subfamily B, polypeptide 14 (.1) AT3G48270 359 / 4e-119 CYP71A26 "cytochrome P450, family 71, subfamily A, polypeptide 26", cytochrome P450, family 71, subfamily A, polypeptide 26 (.1) AT3G26210 359 / 4e-119 CYP71B23 "cytochrome P450, family 71, subfamily B, polypeptide 23", cytochrome P450, family 71, subfamily B, polypeptide 23 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033172 [exp] 707 / 0 AT4G31500 540 / 0.0 SUPERROOT 2, RUNT 1, RED ELONGATED 1, "cytochrome P450, family 83, subfamily B, polypeptide 1", ALTERED TRYPTOPHAN REGULATION 4, cytochrome P450, family 83, subfamily B, polypeptide 1 (.1) Lus10024315 [exp] 624 / 0 AT4G31500 540 / 0.0 SUPERROOT 2, RUNT 1, RED ELONGATED 1, "cytochrome P450, family 83, subfamily B, polypeptide 1", ALTERED TRYPTOPHAN REGULATION 4, cytochrome P450, family 83, subfamily B, polypeptide 1 (.1) Lus10004517 [exp] 590 / 0 AT4G31500 489 / 6e-170 SUPERROOT 2, RUNT 1, RED ELONGATED 1, "cytochrome P450, family 83, subfamily B, polypeptide 1", ALTERED TRYPTOPHAN REGULATION 4, cytochrome P450, family 83, subfamily B, polypeptide 1 (.1) Lus10033173 [exp] 583 / 0 AT4G31500 462 / 3e-159 SUPERROOT 2, RUNT 1, RED ELONGATED 1, "cytochrome P450, family 83, subfamily B, polypeptide 1", ALTERED TRYPTOPHAN REGULATION 4, cytochrome P450, family 83, subfamily B, polypeptide 1 (.1) Lus10010066 [exp] 575 / 0 AT4G31500 487 / 3e-169 SUPERROOT 2, RUNT 1, RED ELONGATED 1, "cytochrome P450, family 83, subfamily B, polypeptide 1", ALTERED TRYPTOPHAN REGULATION 4, cytochrome P450, family 83, subfamily B, polypeptide 1 (.1) Lus10034502 [exp] 571 / 0 AT4G31500 477 / 1e-166 SUPERROOT 2, RUNT 1, RED ELONGATED 1, "cytochrome P450, family 83, subfamily B, polypeptide 1", ALTERED TRYPTOPHAN REGULATION 4, cytochrome P450, family 83, subfamily B, polypeptide 1 (.1) Lus10012399 [exp] 553 / 0 AT4G31500 516 / 2e-180 SUPERROOT 2, RUNT 1, RED ELONGATED 1, "cytochrome P450, family 83, subfamily B, polypeptide 1", ALTERED TRYPTOPHAN REGULATION 4, cytochrome P450, family 83, subfamily B, polypeptide 1 (.1) Lus10012395 [exp] 524 / 0 AT4G31500 492 / 4e-171 SUPERROOT 2, RUNT 1, RED ELONGATED 1, "cytochrome P450, family 83, subfamily B, polypeptide 1", ALTERED TRYPTOPHAN REGULATION 4, cytochrome P450, family 83, subfamily B, polypeptide 1 (.1) Lus10012400 [exp] 511 / 1e-178 AT4G31500 458 / 8e-158 SUPERROOT 2, RUNT 1, RED ELONGATED 1, "cytochrome P450, family 83, subfamily B, polypeptide 1", ALTERED TRYPTOPHAN REGULATION 4, cytochrome P450, family 83, subfamily B, polypeptide 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G025350 [exp] 607 / 0 AT4G31500 514 / 7e-180 SUPERROOT 2, RUNT 1, RED ELONGATED 1, "cytochrome P450, family 83, subfamily B, polypeptide 1", ALTERED TRYPTOPHAN REGULATION 4, cytochrome P450, family 83, subfamily B, polypeptide 1 (.1) Potri.002G025425 [exp] 603 / 0 AT4G31500 520 / 0.0 SUPERROOT 2, RUNT 1, RED ELONGATED 1, "cytochrome P450, family 83, subfamily B, polypeptide 1", ALTERED TRYPTOPHAN REGULATION 4, cytochrome P450, family 83, subfamily B, polypeptide 1 (.1) Potri.002G025300 [exp] 600 / 0 AT4G31500 519 / 0.0 SUPERROOT 2, RUNT 1, RED ELONGATED 1, "cytochrome P450, family 83, subfamily B, polypeptide 1", ALTERED TRYPTOPHAN REGULATION 4, cytochrome P450, family 83, subfamily B, polypeptide 1 (.1) Potri.002G026100 [exp] 557 / 0 AT4G31500 472 / 9e-164 SUPERROOT 2, RUNT 1, RED ELONGATED 1, "cytochrome P450, family 83, subfamily B, polypeptide 1", ALTERED TRYPTOPHAN REGULATION 4, cytochrome P450, family 83, subfamily B, polypeptide 1 (.1) Potri.002G025500 [exp] 540 / 0 AT4G31500 502 / 6e-175 SUPERROOT 2, RUNT 1, RED ELONGATED 1, "cytochrome P450, family 83, subfamily B, polypeptide 1", ALTERED TRYPTOPHAN REGULATION 4, cytochrome P450, family 83, subfamily B, polypeptide 1 (.1) Potri.002G025800 [exp] 539 / 0 AT4G31500 490 / 3e-170 SUPERROOT 2, RUNT 1, RED ELONGATED 1, "cytochrome P450, family 83, subfamily B, polypeptide 1", ALTERED TRYPTOPHAN REGULATION 4, cytochrome P450, family 83, subfamily B, polypeptide 1 (.1) Potri.002G026500 [exp] 538 / 0 AT4G31500 489 / 8e-170 SUPERROOT 2, RUNT 1, RED ELONGATED 1, "cytochrome P450, family 83, subfamily B, polypeptide 1", ALTERED TRYPTOPHAN REGULATION 4, cytochrome P450, family 83, subfamily B, polypeptide 1 (.1) Potri.002G026300 [exp] 523 / 0 AT4G31500 474 / 4e-164 SUPERROOT 2, RUNT 1, RED ELONGATED 1, "cytochrome P450, family 83, subfamily B, polypeptide 1", ALTERED TRYPTOPHAN REGULATION 4, cytochrome P450, family 83, subfamily B, polypeptide 1 (.1) Potri.008G184400 [exp] 389 / 2e-130 AT3G26320 535 / 0.0 "cytochrome P450, family 71, subfamily B, polypeptide 36", cytochrome P450, family 71, subfamily B, polypeptide 36 (.1) Potri.008G184000 [exp] 388 / 3e-130 AT3G26320 535 / 0.0 "cytochrome P450, family 71, subfamily B, polypeptide 36", cytochrome P450, family 71, subfamily B, polypeptide 36 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00067 [flax] [poplar] p450 Cytochrome P450
Representative CDS sequence Show only first row Show all	>Lus10034505 pacid=23162753 polypeptide=Lus10034505 locus=Lus10034505.g ID=Lus10034505.BGIv1.0 annot-version=v1.0 ATGACATCTTTGGTTATGTACTTTCTCTTCATCTTCCCTGCCGCTATCCTATTTCTGATATTCCTCCTGATCAATCAACACAACAACAAAGCCCAAAAAG GGCATCTCCCACCTGGTCCTAAAGGTCTTCCTTTAATAGGAAACTTGTTCCAAATTGACACCTCTGCTCTGCCTCGTTCTCTATGGCAACTTTCTCAAAC ACACGGCCCCCTAATGACTTTGAAGCAAGGCTGCGTCCGCATCCTCGTTGTTTCTTCGGCCAAGATGGCTCGCGAGATCATGAAAAATCACGACCTCACC TTCTCCAACAGGCAATCCGTCGTAGGACAACAAAAGATGTCTTACAACGGCCTTGACTTGGCATTCACACCCTACAGTCCTTACTGGAGGGAGATGAAGA AGATTTGCGTCGTTCATCTCTTGAATTCTCGGAGGGTCCAGAGTTTCCATTCCATTAGAGAGTTCGAGGTTTCGCAAATGATTCAGAAGATATCCAGTAC TGCTACTAGCACCAGCTCGTTAATTAGGCCATCTACTAAGGCTTGCAACTTGTCTGAAGCTATAGTGTCTCTGACAATAACAATCATCTGTCGGGTGGCT TTCGGTAAAAGGTATGAGGAAGAAGGATTTGAAAGAAGAAGGTTCCTGTCACTTCTGAAAGAAACTCAAGTCATGTTTTCGTGCTTTTCTTTCTCGGACC ATTTCCCTCTGTTGGGTTTCGTCGACAGGCTAACCGGGTTCTTCAGTCGCCTAGACAAGAATTTTCAGGAGTTTGATGCTTTTTACCAAGAGATCATTGA CGAGCATCTTGACCCGAATAGAACCACGAAGCCAAATGAAGAGGATATCCTTGATGTATTGCTTCATATTTGGAAGGGCAAGTCCTGTAAACTCCAGCTC ACTGTCGACCATATCAAAGCAATTCTCATGAACATATTCGTTGGAGGAACAGACACAAGTGCAGCAACCATTGTATGGGCTATGACATACTTGATGAAGA ACCCAATAACAATGAGGAAAGCCCAGGAAGAAGTTAGGCATGCAGTTGGGAAGCAAAAAGGTTTTGTGAATGAACAAGACATTCAACAACTATCCTACCT GAAAGCTGTGGTTAAAGAGACATTGAGATTACAGCCGACCGTTCCAATTATGGTTCCAAGGGAATCAACTCAAAGCTGTAACTTAGGTGGTGGGTATGAG ATACCGGCCAAAACGGTTGTTTACATCAATGCTTGGGCCATTGGAAGGGACACTGAAGCTTGGGGAGACAACCCAGAAGAGTTTAAGCCAGAAAGATTTA TTGGAAAATCTATTGACGTCAAAGGCTTGGACTTTGAGTTGATACCATTCGGTGCTGGAAGAAGAATATGTCCTGGAATCCATATGGGTCTTTCCATTGT GGAGCTCTCGCTAGCTAACTTGCTCTACGCATTCGATTGGGAAATGCCGGTTGGGATGAAGAGCGAAGATTTAGACATGGAGGTCTTGCCCGGAATTACT ATGCACAAGAAAAATCAACTTTGTTTACTAGCTAAGAGCTACATATGA
AA sequence Show only first row Show all	>Lus10034505 pacid=23162753 polypeptide=Lus10034505 locus=Lus10034505.g ID=Lus10034505.BGIv1.0 annot-version=v1.0 MTSLVMYFLFIFPAAILFLIFLLINQHNNKAQKGHLPPGPKGLPLIGNLFQIDTSALPRSLWQLSQTHGPLMTLKQGCVRILVVSSAKMAREIMKNHDLT FSNRQSVVGQQKMSYNGLDLAFTPYSPYWREMKKICVVHLLNSRRVQSFHSIREFEVSQMIQKISSTATSTSSLIRPSTKACNLSEAIVSLTITIICRVA FGKRYEEEGFERRRFLSLLKETQVMFSCFSFSDHFPLLGFVDRLTGFFSRLDKNFQEFDAFYQEIIDEHLDPNRTTKPNEEDILDVLLHIWKGKSCKLQL TVDHIKAILMNIFVGGTDTSAATIVWAMTYLMKNPITMRKAQEEVRHAVGKQKGFVNEQDIQQLSYLKAVVKETLRLQPTVPIMVPRESTQSCNLGGGYE IPAKTVVYINAWAIGRDTEAWGDNPEEFKPERFIGKSIDVKGLDFELIPFGAGRRICPGIHMGLSIVELSLANLLYAFDWEMPVGMKSEDLDMEVLPGIT MHKKNQLCLLAKSYI

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G31500		SUR2, RNT1, RED...	SUPERROOT 2, RUNT 1, RED ELONG...		Lus10034505 [exp]	0	1
AT1G23420	YABBY	INO, YAB4	INNER NO OUTER, Plant-specific...		Lus10030596 [exp]	2.0	0.9559
AT5G51890			Peroxidase superfamily protein...		Lus10027405 [exp]	3.0	0.9425
AT3G23730		XTH16	xyloglucan endotransglucosylas...		Lus10010939 [exp]	3.5	0.9391
AT5G07830		ATGUS2	glucuronidase 2 (.1)		Lus10003468 [exp]	5.1	0.9454
AT5G48540			receptor-like protein kinase-r...		Lus10025875 [exp]	6.7	0.9370
					Lus10034979 [exp]	6.9	0.9316
AT1G77380		AAP3, ATAAP3	amino acid permease 3 (.1)		Lus10024302 [exp]	8.5	0.9093
AT4G23030			MATE efflux family protein (.1...		Lus10027417 [exp]	9.5	0.9047
AT5G51890			Peroxidase superfamily protein...		Lus10031664 [exp]	9.8	0.9068
AT4G03230			S-locus lectin protein kinase ...		Lus10031603 [exp]	11.5	0.9087

Compare expression of checked genes

Lus10034505 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.