Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G27230 503 / 4e-178 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT5G40830 484 / 2e-170 ATRAD3, ATATR S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) AT3G05390 197 / 3e-58 unknown protein AT4G01240 196 / 6e-56 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT1G29790 179 / 5e-52 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033164 [exp] 561 / 0 AT3G27230 451 / 3e-155 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10024318 [exp] 545 / 0 AT3G27230 581 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10012420 [exp] 323 / 2e-109 AT3G27230 320 / 7e-109 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10024319 [exp] 261 / 7e-86 AT3G27230 268 / 2e-89 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10007385 [exp] 219 / 5e-67 AT5G40830 277 / 1e-89 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) Lus10020803 [exp] 218 / 3e-66 AT5G40830 282 / 1e-91 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) Lus10010138 [exp] 199 / 8e-59 AT4G01240 620 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10035135 [exp] 193 / 2e-56 AT4G01240 367 / 1e-120 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10004494 [exp] 192 / 2e-56 AT3G05390 699 / 0.0 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G236600 [exp] 564 / 0 AT3G27230 634 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.002G024800 [exp] 561 / 0 AT3G27230 600 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.017G135100 [exp] 223 / 8e-69 AT3G05390 278 / 3e-89 unknown protein Potri.004G083800 [exp] 219 / 6e-67 AT3G05390 278 / 3e-89 unknown protein Potri.004G231100 [exp] 213 / 5e-64 AT3G05390 287 / 2e-92 unknown protein Potri.004G116900 [exp] 205 / 6e-61 AT4G01240 388 / 7e-129 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.002G165300 [exp] 203 / 3e-60 AT4G01240 662 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.013G019400 [exp] 201 / 2e-59 AT3G05390 753 / 0.0 unknown protein Potri.011G079000 [exp] 178 / 7e-52 AT1G29790 439 / 2e-154 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) Potri.001G352700 [exp] 176 / 4e-51 AT1G29790 437 / 2e-153 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF03141 [flax] [poplar] Methyltransf_29 Putative S-adenosyl-L-methionine-dependent methyltransferase
Representative CDS sequence Show only first row Show all	>Lus10034506 pacid=23162719 polypeptide=Lus10034506 locus=Lus10034506.g ID=Lus10034506.BGIv1.0 annot-version=v1.0 ATGGGAACAGTATCACTGAAAATAGGAGAAGGAAGCGCCAGATTCAAGCGAGCTACTCTTTGCTCTTCCGCTGCTAACCTTCTCATGATCCTTTCTGTCA TCACTACCAATCTCTTCGCTCTTTACGCCTTCAGTTCCTCCCCACCAAGTCACAACAACAACAATCTCATCATCCATAAGAACATCTCCTTGCTCTCCCA CCACATCTCTCTCATCCTCAGCGAGATCGATTCTTCCCAGAAGAAGCTAGCCAAGATGGAGAAAGATCTTTTGGGTTACGACACCATCGATATCTCCACA CCCAACATCGCTTCCGAGCTCAAATTTTACCTCCAGCACCACCGCCTTCCTTTAGGCAAAGATTCCAGAACTGGGATCACAGAAATGGTGGCTTCAGTCG GTCATTCTTGCCATAAATCCGCCGATCTCTTGTCTCAGTATATGAATTACAAGGTCTCTGGACCTTGTCCTGATGATTGGAACTTGGCCCAGAAGTTGAT TCTTCGTGGATGTGAGCCTTTGCCCAGGAGGAGGTGCTTTGCTAAGTTTGTTCCCAAAGTAGGTCTTCTGCTTAAACCCTTTCCTGTTTCTCTTTGGAAT TCCGTCAGTGATAAGATTGCAATGAGTTGGAGTAGCTTTGGTTGCAAGAGCCTTGAATGTTTGAGTAAGAAGAAGTTGAATAGAGAATGCGTTGGTTGCT TTGATTTGAGTGATAATGGGAATGAGAAGAGTCTAAAGTATGTCAAGGCTAAAGGGAAGAATGATTTTGTTATTGATGATGTTTTGGGATTGGCAAGCGG TGGGATTAGGACAGGGTTTGACATTGGTGGTGGTAGTGGCTCCTCTGGGACGTTTGCTGCTAGAATGGCGGAGAGGAATGTGACTGTGATCACCAATACA TTGAACATTGATGCTCCCTTCAGTGAGTTTGTTGCTGCAAGAGGGCTATTTCCTCTCTACTTGAGTTTGGATCATAGGTTTCCGTTCTACGATAATGTCT TCGATTTGATTCATGCGTCCAGTGGATTGGATGTCGTTGGCGGAAGTAATAAGCCTGAGAAGCTCGAGTTCTTGATGTTTGACATCGATCGTATACTGAG AGCTGGAGGGTTGTTTTGGTTGGATAACTTCTATTGTGCTAATGATGACAAGAAATGGGCAGTGACTCGGTTGATAGAGAAGTTTGGGTATAAGAAGTTA AAATGGGTTGTGGGAGAGAAGGTAGATACAGCTGGGAGATCTGAAGTTTATTTATCTGCTGTTCTTCAAAAGCCTGCAAGGGGCTGA
AA sequence Show only first row Show all	>Lus10034506 pacid=23162719 polypeptide=Lus10034506 locus=Lus10034506.g ID=Lus10034506.BGIv1.0 annot-version=v1.0 MGTVSLKIGEGSARFKRATLCSSAANLLMILSVITTNLFALYAFSSSPPSHNNNNLIIHKNISLLSHHISLILSEIDSSQKKLAKMEKDLLGYDTIDIST PNIASELKFYLQHHRLPLGKDSRTGITEMVASVGHSCHKSADLLSQYMNYKVSGPCPDDWNLAQKLILRGCEPLPRRRCFAKFVPKVGLLLKPFPVSLWN SVSDKIAMSWSSFGCKSLECLSKKKLNRECVGCFDLSDNGNEKSLKYVKAKGKNDFVIDDVLGLASGGIRTGFDIGGGSGSSGTFAARMAERNVTVITNT LNIDAPFSEFVAARGLFPLYLSLDHRFPFYDNVFDLIHASSGLDVVGGSNKPEKLEFLMFDIDRILRAGGLFWLDNFYCANDDKKWAVTRLIEKFGYKKL KWVVGEKVDTAGRSEVYLSAVLQKPARG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G27230			S-adenosyl-L-methionine-depend...		Lus10034506 [exp]	0	1
AT3G27230			S-adenosyl-L-methionine-depend...		Lus10033164 [exp]	2.0	0.8119
AT2G28100		ATFUC1	alpha-L-fucosidase 1 (.1)		Lus10021427 [exp]	13.1	0.7526
AT2G18040		PIN1AT	"peptidylprolyl cis/trans isom...		Lus10014266 [exp]	14.3	0.7490
AT5G26667		PYR6	P-loop containing nucleoside t...		Lus10019509 [exp]	21.0	0.7555
AT5G47520		AtRABA5a	RAB GTPase homolog A5A (.1)		Lus10000536 [exp]	21.7	0.7496
AT5G07720			Galactosyl transferase GMA12/M...		Lus10021631 [exp]	23.1	0.7751
AT2G42310			unknown protein		Lus10011305 [exp]	23.3	0.6945
AT2G45790		ATPMM	phosphomannomutase (.1)		Lus10009825 [exp]	26.3	0.7266
AT4G34215			Domain of unknown function (DU...		Lus10019817 [exp]	27.3	0.7367
AT5G07720			Galactosyl transferase GMA12/M...		Lus10000563 [exp]	35.8	0.7423

Compare expression of checked genes

Lus10034506 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.