Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G75590 189 / 1e-62 SAUR-like auxin-responsive protein family (.1) AT5G10990 180 / 5e-59 SAUR-like auxin-responsive protein family (.1) AT1G19840 170 / 5e-55 SAUR-like auxin-responsive protein family (.1) AT4G34750 149 / 7e-47 SAUR-like auxin-responsive protein family (.1.2) AT2G24400 87 / 6e-22 SAUR-like auxin-responsive protein family (.1) AT4G34760 83 / 2e-21 SAUR-like auxin-responsive protein family (.1) AT5G20810 84 / 7e-21 SAUR-like auxin-responsive protein family (.1.2) AT3G43120 82 / 1e-20 SAUR-like auxin-responsive protein family (.1) AT2G21220 81 / 2e-20 SAUR-like auxin-responsive protein family (.1) AT4G34770 79 / 6e-20 SAUR-like auxin-responsive protein family (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033161 [exp] 291 / 7e-103 AT1G75590 187 / 4e-62 SAUR-like auxin-responsive protein family (.1) Lus10012426 [exp] 218 / 9e-74 AT1G75590 181 / 2e-59 SAUR-like auxin-responsive protein family (.1) Lus10024322 [exp] 179 / 6e-59 AT1G75590 152 / 3e-48 SAUR-like auxin-responsive protein family (.1) Lus10012190 [exp] 136 / 1e-41 AT4G34750 147 / 4e-46 SAUR-like auxin-responsive protein family (.1.2) Lus10042374 [exp] 135 / 3e-41 AT5G10990 125 / 8e-38 SAUR-like auxin-responsive protein family (.1) Lus10026297 [exp] 134 / 5e-41 AT5G10990 125 / 2e-37 SAUR-like auxin-responsive protein family (.1) Lus10021130 [exp] 88 / 3e-23 AT4G34750 97 / 8e-27 SAUR-like auxin-responsive protein family (.1.2) Lus10017179 [exp] 86 / 3e-22 AT4G34750 89 / 6e-24 SAUR-like auxin-responsive protein family (.1.2) Lus10042376 [exp] 79 / 1e-19 AT4G34770 136 / 3e-43 SAUR-like auxin-responsive protein family (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G237000 [exp] 215 / 7e-73 AT1G75590 200 / 4e-67 SAUR-like auxin-responsive protein family (.1) Potri.002G024500 [exp] 214 / 1e-72 AT1G75590 194 / 1e-64 SAUR-like auxin-responsive protein family (.1) Potri.004G164300 [exp] 170 / 2e-55 AT5G10990 170 / 3e-55 SAUR-like auxin-responsive protein family (.1) Potri.009G125900 [exp] 168 / 2e-54 AT5G10990 157 / 5e-50 SAUR-like auxin-responsive protein family (.1) Potri.009G127400 [exp] 85 / 4e-22 AT4G34770 111 / 3e-33 SAUR-like auxin-responsive protein family (.1) Potri.006G126500 [exp] 84 / 1e-21 AT2G37030 131 / 1e-40 SAUR-like auxin-responsive protein family (.1) Potri.016G091500 [exp] 83 / 3e-21 AT2G37030 136 / 2e-42 SAUR-like auxin-responsive protein family (.1) Potri.018G132400 [exp] 82 / 2e-20 AT3G43120 64 / 2e-13 SAUR-like auxin-responsive protein family (.1) Potri.018G063400 [exp] 82 / 4e-20 AT5G20810 219 / 3e-74 SAUR-like auxin-responsive protein family (.1.2) Potri.008G037900 [exp] 80 / 6e-20 AT2G37030 103 / 2e-29 SAUR-like auxin-responsive protein family (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF02519 [flax] [poplar] Auxin_inducible Auxin responsive protein
Representative CDS sequence Show only first row Show all	>Lus10034507 pacid=23162843 polypeptide=Lus10034507 locus=Lus10034507.g ID=Lus10034507.BGIv1.0 annot-version=v1.0 ATGTCTGCTGGACTCTCCAAATGCGCCAAAATCCGCCACATTGTGAAGCTTCGCCAAATGCTCCGACGTTGGAGGAACAAGGCAAGGGTATCATCATCAC TCAACAGGACCACCACCGCCCCTTCCGACGTCCCCTCCGGCCACATCGCCATCTACGTCGGAATCACCTCTCGCCGGTTCGTCGTCCGAGCCACATACCT CAACCACCCGATTTTTAAGAAACTCCTCACCCAGGCCGAGGAAGAGTACGGATTCTCCAACCAAGGTCCCCTGACCATCCCCTGCGACGAGTCCTTGTTC GAAGAAGCGATCCGGTACATTTCCAGATCCGAGTCCGGGAAATCCACCACCCGAATCGTCAGCCTGGAGGATCTAGTCAAGAACTGCCGCAACATTGGGA TCGATTTGTGGACCGACTCCCGGCCGCTTCTCGCGGAGAAAACTATCTGTTGA
AA sequence Show only first row Show all	>Lus10034507 pacid=23162843 polypeptide=Lus10034507 locus=Lus10034507.g ID=Lus10034507.BGIv1.0 annot-version=v1.0 MSAGLSKCAKIRHIVKLRQMLRRWRNKARVSSSLNRTTTAPSDVPSGHIAIYVGITSRRFVVRATYLNHPIFKKLLTQAEEEYGFSNQGPLTIPCDESLF EEAIRYISRSESGKSTTRIVSLEDLVKNCRNIGIDLWTDSRPLLAEKTIC

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G75590			SAUR-like auxin-responsive pro...		Lus10034507 [exp]	0	1
AT5G14600			S-adenosyl-L-methionine-depend...		Lus10032132 [exp]	17.9	0.8650
AT4G13430		ATLEUC1, IIL1	isopropyl malate isomerase lar...		Lus10032620 [exp]	27.8	0.8776
AT3G22960		PKP-ALPHA, PKP1	PLASTIDIAL PYRUVATE KINASE 1, ...		Lus10006633 [exp]	40.9	0.8657
AT3G14067			Subtilase family protein (.1)		Lus10008116 [exp]	45.4	0.8040
AT3G20660		4-Oct, ATOCT4	organic cation/carnitine trans...		Lus10013330 [exp]	59.9	0.8452
AT2G43870			Pectin lyase-like superfamily ...		Lus10002124 [exp]	69.1	0.8634
AT5G10910			mraW methylase family protein ...		Lus10042729 [exp]	78.8	0.8186
AT4G19710		AK-HSDHII, AK-H...	aspartate kinase-homoserine de...		Lus10030339 [exp]	108.6	0.8504
AT3G03420			Ku70-binding family protein (....		Lus10014579 [exp]	110.7	0.8519
AT2G02360		ATPP2-B10	phloem protein 2-B10 (.1)		Lus10003444 [exp]	140.0	0.8407

Compare expression of checked genes

Lus10034507 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.