Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G19835 535 / 0 Plant protein of unknown function (DUF869) (.1), Plant protein of unknown function (DUF869) (.2) AT1G47900 522 / 3e-176 Plant protein of unknown function (DUF869) (.1), Plant protein of unknown function (DUF869) (.2) AT4G36120 421 / 1e-137 Plant protein of unknown function (DUF869) (.1) AT2G23360 190 / 2e-52 Plant protein of unknown function (DUF869) (.1) AT1G77580 124 / 4e-30 Plant protein of unknown function (DUF869) (.1), Plant protein of unknown function (DUF869) (.2) AT3G05270 123 / 6e-30 Plant protein of unknown function (DUF869) (.1), Plant protein of unknown function (DUF869) (.2) AT1G21810 109 / 2e-25 Plant protein of unknown function (DUF869) (.1) AT3G19370 84 / 6e-17 Plant protein of unknown function (DUF869) (.1), Plant protein of unknown function (DUF869) (.2), Plant protein of unknown function (DUF869) (.3) AT2G24470 68 / 5e-14 Plant protein of unknown function (DUF869) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033160 [exp] 838 / 0 AT1G19835 949 / 0.0 Plant protein of unknown function (DUF869) (.1), Plant protein of unknown function (DUF869) (.2) Lus10024324 [exp] 704 / 0 AT1G19835 919 / 0.0 Plant protein of unknown function (DUF869) (.1), Plant protein of unknown function (DUF869) (.2) Lus10012431 [exp] 696 / 0 AT1G19835 901 / 0.0 Plant protein of unknown function (DUF869) (.1), Plant protein of unknown function (DUF869) (.2) Lus10024325 [exp] 550 / 0 AT1G19835 787 / 0.0 Plant protein of unknown function (DUF869) (.1), Plant protein of unknown function (DUF869) (.2) Lus10004994 [exp] 191 / 1e-52 AT2G23360 481 / 7e-154 Plant protein of unknown function (DUF869) (.1) Lus10018164 [exp] 145 / 4e-37 AT1G77580 395 / 6e-129 Plant protein of unknown function (DUF869) (.1), Plant protein of unknown function (DUF869) (.2) Lus10029679 [exp] 143 / 2e-36 AT1G77580 372 / 1e-119 Plant protein of unknown function (DUF869) (.1), Plant protein of unknown function (DUF869) (.2) Lus10000186 [exp] 139 / 1e-35 AT1G77580 333 / 4e-106 Plant protein of unknown function (DUF869) (.1), Plant protein of unknown function (DUF869) (.2) Lus10025674 [exp] 140 / 2e-35 AT1G77580 343 / 9e-109 Plant protein of unknown function (DUF869) (.1), Plant protein of unknown function (DUF869) (.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G237100 [exp] 657 / 0 AT1G19835 869 / 0.0 Plant protein of unknown function (DUF869) (.1), Plant protein of unknown function (DUF869) (.2) Potri.002G024400 [exp] 652 / 0 AT1G19835 941 / 0.0 Plant protein of unknown function (DUF869) (.1), Plant protein of unknown function (DUF869) (.2) Potri.005G140300 [exp] 226 / 6e-65 AT2G23360 551 / 0.0 Plant protein of unknown function (DUF869) (.1) Potri.007G046100 [exp] 221 / 5e-63 AT2G23360 549 / 3e-180 Plant protein of unknown function (DUF869) (.1) Potri.009G099500 [exp] 183 / 5e-50 AT2G23360 295 / 2e-86 Plant protein of unknown function (DUF869) (.1) Potri.001G304200 [exp] 180 / 6e-49 AT2G23360 279 / 2e-80 Plant protein of unknown function (DUF869) (.1) Potri.002G083400 [exp] 145 / 3e-37 AT3G05270 334 / 2e-105 Plant protein of unknown function (DUF869) (.1), Plant protein of unknown function (DUF869) (.2) Potri.005G178100 [exp] 138 / 4e-35 AT3G05270 356 / 1e-114 Plant protein of unknown function (DUF869) (.1), Plant protein of unknown function (DUF869) (.2) Potri.007G098500 [exp] 132 / 5e-33 AT3G05270 310 / 7e-97 Plant protein of unknown function (DUF869) (.1), Plant protein of unknown function (DUF869) (.2) Potri.005G070400 [exp] 126 / 7e-31 AT3G05270 308 / 6e-96 Plant protein of unknown function (DUF869) (.1), Plant protein of unknown function (DUF869) (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF05911 [flax] [poplar] FPP Filament-like plant protein, long coiled-coil
Representative CDS sequence Show only first row Show all	>Lus10034509 pacid=23162787 polypeptide=Lus10034509 locus=Lus10034509.g ID=Lus10034509.BGIv1.0 annot-version=v1.0 ATGGATCGCCGGAGTTGGCCATGGAAGAAGAAATCATCCTCGGAGAAGGCTTCAAAAGCTGCTGCTGCAGCTGCTGAGACTCTTGATATTGCTTTGGCTT CTGGTGAATCACTGGGAAAAACAGACAAGGAGGACAACAACTATAAGAAGCCGAATTATGTTCAAATTTCAGTTGAATCATATACACATTTGACTAGTTT GGAGGACCAAGTAAAATCTTATGAAGAGCAAGTTCAGTCGCTTGATGATGAGATAACTAGTTTGAATGAAAAGCTGTCGGCCGCCGAGGAAGAGATGACT ACCAAAGACAACTTGGTGAAACAGCATGCTAAGGTTGCTGAGGAAGCTGTATGTGGTTGGGAGAAGGCTGAAGCAGAAGCTTTGGCATTGAAGAACAGTC TAGAGACTATGACGCTCTCCAAGTTGACAGCTGAAGATCGTGCAGCACATTTGGATGGTGCTCTCAAAGAATGCATGAGGCAGATAAGGAATCTGAAGGA AGAACATGAACAGAATATACATCAACTTGTTCTTACCAAGAACAAGCAATGTGATAAAATTAGGCTTGATCTTGAAGCAAAGATAGCGAATTTAGATCAG GAACTACTTAGGTCTGCTGCTGACAATGCAGCGCTCTCAAGGTCATTGCAAGAGCGCGGTAACATGTTATTCAAGATCAGCGAAGACAAGTCACGAGCAG AAGCTGAAATCGAGCTTCTCAAGGGTAATGTGGAATCGTGTGAACGGGAAATAAACTCTATGAAGTATGAAGTGCATGTAGTATCGAAGGAGTTGGAGAT ACGCAATGAAGAGAAGAACATGAGTATGAGATCTGCTGAAGTAGCAAACAAGCAGCATATGGAAGGTGTCAAGAAAATAGCTAAGCTTGAAGCAGAGTGC CAAAGATTACGAGGCCTTGTGAGGAAAAAATTGCCGGGTCCTGCTGCTCTTGCTCAAATGAAACTTGAAGTTGAGAGCTTGGGAGGCGATTATGGAGATT CTAAGATGAAGAGGTCACCTGTCAAACCTTCTAGTCCACACATGTCACCAGTCACTGAATTTTCTGTTGACAATGCACAGAAGTTACACAAAGAGACTCA GTTCCTTACAGAACGTTTATTTGCCATGGAGGAGGAAACCAAGATGCTCAAAGAAGCTTTAGCTAATCGTAACAGTGAACTTCAGGCTTCTCGAAACTTA TGTGCTAAGGCAACAAGCAGGCTCCAGAGCTTAGAATCACAACTTCATGTCAGCAATCAACAAAAAAATTCTCCAAAATCCACTGTTCAAAATGCTAGCA ATCCACCAAGCATCACCTCCATGTCTGAAGATGGCAATGATGATGATCGAAGCTGTGCTGACTCTTGTAGTGCATCAATGATGTCAGAATTTTCACAATC GAAGACAATCGAAGAAGGAAAAGATCAGTGA
AA sequence Show only first row Show all	>Lus10034509 pacid=23162787 polypeptide=Lus10034509 locus=Lus10034509.g ID=Lus10034509.BGIv1.0 annot-version=v1.0 MDRRSWPWKKKSSSEKASKAAAAAAETLDIALASGESLGKTDKEDNNYKKPNYVQISVESYTHLTSLEDQVKSYEEQVQSLDDEITSLNEKLSAAEEEMT TKDNLVKQHAKVAEEAVCGWEKAEAEALALKNSLETMTLSKLTAEDRAAHLDGALKECMRQIRNLKEEHEQNIHQLVLTKNKQCDKIRLDLEAKIANLDQ ELLRSAADNAALSRSLQERGNMLFKISEDKSRAEAEIELLKGNVESCEREINSMKYEVHVVSKELEIRNEEKNMSMRSAEVANKQHMEGVKKIAKLEAEC QRLRGLVRKKLPGPAALAQMKLEVESLGGDYGDSKMKRSPVKPSSPHMSPVTEFSVDNAQKLHKETQFLTERLFAMEEETKMLKEALANRNSELQASRNL CAKATSRLQSLESQLHVSNQQKNSPKSTVQNASNPPSITSMSEDGNDDDRSCADSCSASMMSEFSQSKTIEEGKDQ

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G19835			Plant protein of unknown funct...		Lus10034509 [exp]	0	1
AT1G19835			Plant protein of unknown funct...		Lus10033160 [exp]	4.2	0.8943
AT1G52360			Coatomer, beta' subunit (.1.2)		Lus10037525 [exp]	4.7	0.9349
AT1G54560		PCR1, ATXIE, XI...	MYOSIN XI E, Myosin family pro...		Lus10033864 [exp]	6.3	0.9150
AT5G24710			Transducin/WD40 repeat-like su...		Lus10040563 [exp]	7.7	0.9272
AT1G19835			Plant protein of unknown funct...		Lus10034510 [exp]	11.7	0.8229
AT2G45540			WD-40 repeat family protein / ...		Lus10015857 [exp]	12.5	0.9233
AT2G21390			Coatomer, alpha subunit (.1)		Lus10037538 [exp]	13.0	0.9181
AT4G31480			Coatomer, beta subunit (.1.2)		Lus10039684 [exp]	13.1	0.9059
AT1G22275		ZYP1b	Myosin heavy chain-related pro...		Lus10036473 [exp]	13.1	0.8114
AT5G19820		EMB2734	embryo defective 2734, ARM rep...		Lus10039172 [exp]	13.7	0.8949

Compare expression of checked genes

Lus10034509 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.