Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G19835 267 / 1e-79 Plant protein of unknown function (DUF869) (.1), Plant protein of unknown function (DUF869) (.2) AT1G47900 250 / 5e-73 Plant protein of unknown function (DUF869) (.1), Plant protein of unknown function (DUF869) (.2) AT4G36120 147 / 1e-37 Plant protein of unknown function (DUF869) (.1) AT2G23360 47 / 2e-05 Plant protein of unknown function (DUF869) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033160 [exp] 752 / 0 AT1G19835 949 / 0.0 Plant protein of unknown function (DUF869) (.1), Plant protein of unknown function (DUF869) (.2) Lus10024325 [exp] 461 / 6e-154 AT1G19835 787 / 0.0 Plant protein of unknown function (DUF869) (.1), Plant protein of unknown function (DUF869) (.2) Lus10012431 [exp] 463 / 3e-153 AT1G19835 901 / 0.0 Plant protein of unknown function (DUF869) (.1), Plant protein of unknown function (DUF869) (.2) Lus10024324 [exp] 461 / 1e-152 AT1G19835 919 / 0.0 Plant protein of unknown function (DUF869) (.1), Plant protein of unknown function (DUF869) (.2) Lus10032386 [exp] 130 / 2e-36 AT1G19835 84 / 4e-20 Plant protein of unknown function (DUF869) (.1), Plant protein of unknown function (DUF869) (.2) Lus10033813 [exp] 67 / 7e-14 AT1G19835 57 / 1e-11 Plant protein of unknown function (DUF869) (.1), Plant protein of unknown function (DUF869) (.2) Lus10014076 [exp] 52 / 1e-06 AT4G34100 1575 / 0.0 RING/U-box superfamily protein (.1.2) Lus10019839 [exp] 48 / 2e-05 AT4G34100 1668 / 0.0 RING/U-box superfamily protein (.1.2) Lus10012712 [exp] 44 / 0.0003 AT1G77580 233 / 1e-69 Plant protein of unknown function (DUF869) (.1), Plant protein of unknown function (DUF869) (.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G237100 [exp] 394 / 2e-126 AT1G19835 869 / 0.0 Plant protein of unknown function (DUF869) (.1), Plant protein of unknown function (DUF869) (.2) Potri.002G024400 [exp] 391 / 2e-125 AT1G19835 941 / 0.0 Plant protein of unknown function (DUF869) (.1), Plant protein of unknown function (DUF869) (.2) Potri.005G140300 [exp] 55 / 1e-07 AT2G23360 551 / 0.0 Plant protein of unknown function (DUF869) (.1) Potri.005G178100 [exp] 52 / 1e-06 AT3G05270 356 / 1e-114 Plant protein of unknown function (DUF869) (.1), Plant protein of unknown function (DUF869) (.2) Potri.007G046100 [exp] 49 / 6e-06 AT2G23360 549 / 3e-180 Plant protein of unknown function (DUF869) (.1) Potri.001G304200 [exp] 48 / 1e-05 AT2G23360 279 / 2e-80 Plant protein of unknown function (DUF869) (.1) Potri.005G070400 [exp] 47 / 4e-05 AT3G05270 308 / 6e-96 Plant protein of unknown function (DUF869) (.1), Plant protein of unknown function (DUF869) (.2) Potri.002G083400 [exp] 46 / 5e-05 AT3G05270 334 / 2e-105 Plant protein of unknown function (DUF869) (.1), Plant protein of unknown function (DUF869) (.2) Potri.009G099500 [exp] 45 / 0.0001 AT2G23360 295 / 2e-86 Plant protein of unknown function (DUF869) (.1) Potri.007G098500 [exp] 45 / 0.0001 AT3G05270 310 / 7e-97 Plant protein of unknown function (DUF869) (.1), Plant protein of unknown function (DUF869) (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF05911 [flax] [poplar] FPP Filament-like plant protein, long coiled-coil
Representative CDS sequence Show only first row Show all	>Lus10034510 pacid=23162746 polypeptide=Lus10034510 locus=Lus10034510.g ID=Lus10034510.BGIv1.0 annot-version=v1.0 ATGGATGACTTCCTTGAGATGGAGAAGCTCGCTTGTTTAGATGCCCCTGATTCCAGCAAGACTTCTGATATGGCTAATGGTGCAGTTCAAGGTAAAGAGC AGCATGGTCAGCTTAAATCAGAGTTATCCACATTGCTCGACTCATTGGCTAAGGAAGCCGATATGAGAAAGATATTGGAGGATGTTAAAGCTGCTGTGCA GGATGGATCAGTAGCAAAGGCTTCTGTGACTGAAATGAACCCAGAATTAGCTGCTGCAGTTTCTCAGATTCATGACTTTGTGTTACTCCTCCGTAAAGAA GCAATGGCAGTTCATGATGCTACAGAGGAAAATGGATTGAACAAGAAAATTGATGAGCTCTCACTCACCATTAACAAAGTTCTGAATCAAGATACAAGCT TGACGACTTTCATTTTCGACCTTTCAAGTGTTCTCAATGAAGCCGGTGAACTTCGGTTCAGTGTCCTCGGATACAAAGGAAGCGAAGCTGAAATCAGCAG TCCAGATTGCATTGACAAAGTTGCATTACCTGAGAACAAGATTGTACTGGATGATGGTCCATCATCTGGTGAGACTTATGAAGCACTGAAATCGAGCCCT GAGGTGCCTGATGATGGGGACTTAATGTCATCATGCACTATCTCGATGGAAGAGTTAGAAGAGCTGAAATTGGAGAAGGACAATATGGCCACTGATCTGT CTAGATGTACTGCAGATCTTGAAACCACCAAGTCCCAATTACAAGAAACTGAGCAACAGCTTGTTGAAGTTAAATCAGAGTTGGCTTCTTCTAAAAAGTC AAATGCTTTGGGCGAGACACAATTGAAGTGTATGGCGGAATCATATAGATCACTTGAAGTACGAGCAGAGGAGCTTGAAAATGAGGTCAGCCTCCTCAGA GCTAAGACAGAGGCATTAGAAACCGAACTTGAATCTGGAAAGAGGAGCCACGAGGATGTCCTGAGCAGATGCAAGGATCTTCAAGAGGAATTGGAAAGGA ATGAGAGTTGCCTGGTATGCGCAGCAGCAGCAGCTGAGATGGACATCAAGAGCAAACAGGAGCAAGAACTGGCAGCTGCAACAGAGAAGCTAGCAGAGTG CCAAGAGACCATATTCCTTCTAGGCAAGCAACTCAAGTCTCTGCAGCCTCAGACAGAAACTACTACTGGTTCATCTCCCCCAAGCGAAAAAGGTGAACAA GAACCAACCACGAGTGACACAAACTTGAAAGGCTCAGACCAGCTAGAAGCCATGGAGTCTGTGAATTCTCCTACTCCTCAATCCCCTGTACACCTCTACA GCCACCCAGGCAGTCCATCTAATTCAGAAACCAACTTCTTGAGGTCACCAGTCAATTCAAGGTATCCGAAACACCGGTCCACGAAGTCGATTTCATCATC TTCTTCTTCATCCAGCCTGACCCCGGAGAAACATGGAAGGGGGTTTAGCAGGTTCTTCTCCTCCAAAGGAAGTAAGAATGGGTATGACAAATGA
AA sequence Show only first row Show all	>Lus10034510 pacid=23162746 polypeptide=Lus10034510 locus=Lus10034510.g ID=Lus10034510.BGIv1.0 annot-version=v1.0 MDDFLEMEKLACLDAPDSSKTSDMANGAVQGKEQHGQLKSELSTLLDSLAKEADMRKILEDVKAAVQDGSVAKASVTEMNPELAAAVSQIHDFVLLLRKE AMAVHDATEENGLNKKIDELSLTINKVLNQDTSLTTFIFDLSSVLNEAGELRFSVLGYKGSEAEISSPDCIDKVALPENKIVLDDGPSSGETYEALKSSP EVPDDGDLMSSCTISMEELEELKLEKDNMATDLSRCTADLETTKSQLQETEQQLVEVKSELASSKKSNALGETQLKCMAESYRSLEVRAEELENEVSLLR AKTEALETELESGKRSHEDVLSRCKDLQEELERNESCLVCAAAAAEMDIKSKQEQELAAATEKLAECQETIFLLGKQLKSLQPQTETTTGSSPPSEKGEQ EPTTSDTNLKGSDQLEAMESVNSPTPQSPVHLYSHPGSPSNSETNFLRSPVNSRYPKHRSTKSISSSSSSSSLTPEKHGRGFSRFFSSKGSKNGYDK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G19835			Plant protein of unknown funct...		Lus10034510 [exp]	0	1
AT1G19835			Plant protein of unknown funct...		Lus10033160 [exp]	6.3	0.8014
AT2G24230			Leucine-rich repeat protein ki...		Lus10036608 [exp]	11.0	0.7166
AT1G19835			Plant protein of unknown funct...		Lus10034509 [exp]	11.7	0.8229
AT1G72880			Survival protein SurE-like pho...		Lus10015610 [exp]	12.7	0.7162
AT4G10570		UBP9	ubiquitin-specific protease 9 ...		Lus10017343 [exp]	15.3	0.6853
AT5G03040		IQD2	IQ-domain 2 (.1.2.3)		Lus10041419 [exp]	17.5	0.7121
AT4G39050			Kinesin motor family protein (...		Lus10041958 [exp]	21.1	0.7416
AT4G30160		ATVLN4, VLN4	villin 4 (.1.2)		Lus10025461 [exp]	34.1	0.7281
AT1G72770		HAB1	HYPERSENSITIVE TO ABA1, homolo...		Lus10025000 [exp]	36.8	0.5937
AT2G40460			Major facilitator superfamily ...		Lus10029063 [exp]	42.8	0.6739

Compare expression of checked genes

Lus10034510 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.