Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G19920 744 / 0 ASA1, APS2 ATP SULFURYLASE ARABIDOPSIS 1, Pseudouridine synthase/archaeosine transglycosylase-like family protein (.1) AT3G22890 677 / 0 APS1 ATP sulfurylase 1 (.1) AT4G14680 674 / 0 APS3 Pseudouridine synthase/archaeosine transglycosylase-like family protein (.1) AT5G43780 659 / 0 APS4 Pseudouridine synthase/archaeosine transglycosylase-like family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033158 [exp] 972 / 0 AT1G19920 736 / 0.0 ATP SULFURYLASE ARABIDOPSIS 1, Pseudouridine synthase/archaeosine transglycosylase-like family protein (.1) Lus10006629 [exp] 676 / 0 AT3G22890 769 / 0.0 ATP sulfurylase 1 (.1) Lus10039389 [exp] 558 / 0 AT4G14680 655 / 0.0 Pseudouridine synthase/archaeosine transglycosylase-like family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G024200 [exp] 764 / 0 AT1G19920 758 / 0.0 ATP SULFURYLASE ARABIDOPSIS 1, Pseudouridine synthase/archaeosine transglycosylase-like family protein (.1) Potri.005G237300 [exp] 756 / 0 AT1G19920 734 / 0.0 ATP SULFURYLASE ARABIDOPSIS 1, Pseudouridine synthase/archaeosine transglycosylase-like family protein (.1) Potri.008G159000 [exp] 674 / 0 AT3G22890 767 / 0.0 ATP sulfurylase 1 (.1) Potri.010G081200 [exp] 665 / 0 AT3G22890 758 / 0.0 ATP sulfurylase 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0039 [flax] [poplar] HUP PF01747 [flax] [poplar] ATP-sulfurylase ATP-sulfurylase
Representative CDS sequence Show only first row Show all	>Lus10034513 pacid=23162783 polypeptide=Lus10034513 locus=Lus10034513.g ID=Lus10034513.BGIv1.0 annot-version=v1.0 ATGTCCCTGACAATCAAGCTCCAAACTTCTCCCCACACTACTCCCCTTCTCAACACTCTCCGACAATCTCCAACCGCCTCGGCGAACTTGACATATAGCC GAAACGGGAATGTAGCAAAACCCTTTTACAGCGCTAACCAGTTGATTTTTCCATTTCTGTCCAGGTCCACAAGGATGAAGCAGTCTGCAGCTCGATTGCC GGCCATCAGGAGCTCCTTGATTGATCCCGACGGCGGGAAGCTGGTGGATTGTATGGTGCCCGATGGGGAGAGACCGGCAAGGGTTTCTGAGGCGGAGAGT TTACCCAAGGTGAAGCTGACCAAGATAGATTTGGAATGGGTTCATGTTGTGGCTGAAGGTTGGGCGAGTCCGTTAAGAGGGTTTATGAGGGAGGATGAGT ATTTGCAGTGCTTGCATTTCAATTCCTTGAGGATGGAGGATGGAAATGTGGTTAATATGTCGCTCCCAATTGTGTTGGCGATTGATGATCTGACCAAGGA GAGTATTGGGTTGGCTAAGGATGTGGCTCTTGTCGGTCCTCAAGGGAATGATCCCATTGCCATTCTTCGAAGTATAGAGATATACAAGCACAACAAAGAA GAGAGGATAGCTAGGACTTGGGGTACAACTGCACCTGGGTTGCCTTATGTGGAGGAGACCATCACTCCAGCTGGGAACTGGCTTATTGGCGGAGATCTTC AAGTCCTGAAACCCATCAAGTACAACGATGGGCTTGATCATTATAGGTTGTCTCCTAAAGAACTAAGAAAGGAATTCGATAAGCGTGGAGCCGATGCAGT TTTTGCATTTCAGCTGAGAAATCCAGTTCACAACGGGCATGCTTTGTTGATGAATGACACTCGTAGGCGGCTGCTAGAAATGGGTTACAAGAATCCAATC CTGTTGCTGCATCCTTTGGGAGGTTTCACTAAGGCTGACGATGTACCTTTGGATGTCCGTATGGAACAACACAGCAAGGTTTTAGAGGACAAAGTTCTTG ATCCAGATACCACAATTGTTGCTATATTCCCATCCCCTATGCATTATGCTGGTCCAACGGAAGTACAGTGGCATGCCAAGGCAAGGATAAATGCAGGAGC TAATTTTTACATTGTTGGCCGTGATCCTGCTGGTATGGGTCATCCAGTGGAGAAGAGAGATTTATATGACCCTGATCATGGAAAGAAAGTGTTAAGCATG GCTCCTGGCCTTGAGAAACTAAATATTTTGCCATTCAGGGTAGCAGCATATGATACAGTTGCAAAGAAGATGGCGTTTTTTGATCCATCAAGAGCTCAAG AGTTTCTTTTCATATCTGGAACAAAGATGAGGAACTTTGCTAAAACGGGGGAGAATCCACCAGATGGTTTTATGTGCCCAGGAGGTTGGGAGGTCCTAGT GAAGTACTATCAGAGCTTACAAGTAGACCAGCAGCCTGCTGTTGTATCTGCTTAA
AA sequence Show only first row Show all	>Lus10034513 pacid=23162783 polypeptide=Lus10034513 locus=Lus10034513.g ID=Lus10034513.BGIv1.0 annot-version=v1.0 MSLTIKLQTSPHTTPLLNTLRQSPTASANLTYSRNGNVAKPFYSANQLIFPFLSRSTRMKQSAARLPAIRSSLIDPDGGKLVDCMVPDGERPARVSEAES LPKVKLTKIDLEWVHVVAEGWASPLRGFMREDEYLQCLHFNSLRMEDGNVVNMSLPIVLAIDDLTKESIGLAKDVALVGPQGNDPIAILRSIEIYKHNKE ERIARTWGTTAPGLPYVEETITPAGNWLIGGDLQVLKPIKYNDGLDHYRLSPKELRKEFDKRGADAVFAFQLRNPVHNGHALLMNDTRRRLLEMGYKNPI LLLHPLGGFTKADDVPLDVRMEQHSKVLEDKVLDPDTTIVAIFPSPMHYAGPTEVQWHAKARINAGANFYIVGRDPAGMGHPVEKRDLYDPDHGKKVLSM APGLEKLNILPFRVAAYDTVAKKMAFFDPSRAQEFLFISGTKMRNFAKTGENPPDGFMCPGGWEVLVKYYQSLQVDQQPAVVSA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G19920		ASA1, APS2	ATP SULFURYLASE ARABIDOPSIS 1,...		Lus10034513 [exp]	0	1
AT1G08470		SSL3	strictosidine synthase-like 3 ...		Lus10008451 [exp]	5.5	0.8937
AT2G20890		PSB29, THF1	THYLAKOID FORMATION1, photosys...		Lus10039748 [exp]	6.6	0.9095
AT4G01050		TROL	thylakoid rhodanese-like (.1)		Lus10005947 [exp]	7.3	0.9037
AT5G04420			Galactose oxidase/kelch repeat...		Lus10028825 [exp]	9.5	0.8646
AT3G01480		ATCYP38, CYP38	ARABIDOPSIS CYCLOPHILIN 38, cy...		Lus10032151 [exp]	9.7	0.9065
AT5G64940		ATATH13, ATOSA1	A. THALIANA OXIDATIVE STRESS-R...		Lus10036636 [exp]	11.8	0.9034
AT4G27600		NARA5	GENES NECESSARY FOR THE ACHIE...		Lus10026867 [exp]	14.7	0.8943
AT4G00370		PHT4;4, ANTR2	anion transporter 2, Major fac...		Lus10036366 [exp]	15.7	0.8832
AT4G37380			Tetratricopeptide repeat (TPR)...		Lus10010385 [exp]	17.5	0.8927
AT4G37850	bHLH	bHLH025	basic helix-loop-helix (bHLH) ...		Lus10020503 [exp]	18.3	0.8449

Compare expression of checked genes

Lus10034513 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.