Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G75660 886 / 0 AtXRN3, XRN3 5'-3' exoribonuclease 3 (.1) AT5G42540 689 / 0 AtXRN2, XRN2 exoribonuclease 2 (.1.2) AT1G54490 335 / 1e-99 ATXRN4, XRN4, EIN5, AIN1 ETHYLENE INSENSITIVE 5, ACC INSENSITIVE 1, exoribonuclease 4 (.1) AT5G45420 51 / 2e-06 MYB maMYB membrane anchored MYB, Duplicated homeodomain-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012434 [exp] 1186 / 0 AT1G75660 1291 / 0.0 5'-3' exoribonuclease 3 (.1) Lus10024327 [exp] 1179 / 0 AT1G75660 1162 / 0.0 5'-3' exoribonuclease 3 (.1) Lus10004119 [exp] 338 / 6e-102 AT1G54490 1140 / 0.0 ETHYLENE INSENSITIVE 5, ACC INSENSITIVE 1, exoribonuclease 4 (.1) Lus10000941 [exp] 323 / 3e-96 AT1G54490 1092 / 0.0 ETHYLENE INSENSITIVE 5, ACC INSENSITIVE 1, exoribonuclease 4 (.1) Lus10015946 [exp] 321 / 2e-94 AT1G54490 1033 / 0.0 ETHYLENE INSENSITIVE 5, ACC INSENSITIVE 1, exoribonuclease 4 (.1) Lus10020397 [exp] 277 / 1e-77 AT1G75660 782 / 0.0 5'-3' exoribonuclease 3 (.1) Lus10013326 [exp] 258 / 3e-72 AT1G75660 636 / 0.0 5'-3' exoribonuclease 3 (.1) Lus10019004 [exp] 232 / 2e-66 AT1G54490 436 / 1e-143 ETHYLENE INSENSITIVE 5, ACC INSENSITIVE 1, exoribonuclease 4 (.1) Lus10013328 [exp] 210 / 8e-57 AT1G75660 516 / 2e-171 5'-3' exoribonuclease 3 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G237500 [exp] 1061 / 0 AT1G75660 1246 / 0.0 5'-3' exoribonuclease 3 (.1) Potri.002G024100 [exp] 964 / 0 AT1G75660 1137 / 0.0 5'-3' exoribonuclease 3 (.1) Potri.005G048900 [exp] 328 / 2e-97 AT1G54490 1231 / 0.0 ETHYLENE INSENSITIVE 5, ACC INSENSITIVE 1, exoribonuclease 4 (.1) Potri.013G035600 [exp] 322 / 1e-94 AT1G54490 1175 / 0.0 ETHYLENE INSENSITIVE 5, ACC INSENSITIVE 1, exoribonuclease 4 (.1) Potri.013G070200 [exp] 269 / 7e-75 AT1G54490 779 / 0.0 ETHYLENE INSENSITIVE 5, ACC INSENSITIVE 1, exoribonuclease 4 (.1) Potri.001G147000 [exp] 54 / 4e-07 AT5G45420 234 / 1e-75 membrane anchored MYB, Duplicated homeodomain-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0280 [flax] [poplar] PIN PF03159 [flax] [poplar] XRN_N XRN 5'-3' exonuclease N-terminus CL0511 [flax] [poplar] Retroviral_zf PF00098 [flax] [poplar] zf-CCHC Zinc knuckle
Representative CDS sequence Show only first row Show all	>Lus10034514 pacid=23162879 polypeptide=Lus10034514 locus=Lus10034514.g ID=Lus10034514.BGIv1.0 annot-version=v1.0 ATGAGCTTCGGCAAGGACATTGCATTGTTGAATGCTTTGAAGGTGTTCCTCATGGAGGTAGCGATGAGGTGGGAAAAGATCACGGCGGCGGTTGGAGGGA AGTCGAATTCCTCGACGACAATGACCACTTTCCACTTCTCCCGCTTCCACCTACTCTCTCACTTTGTACTGCCGGCGGAAGGCGGTGCAACCAATGGTGT TGCTCCTCGTGCGAAGATGAATCAACAGCGGTCTAGGCGTTTTAGGGCTGCTAAAGATGCATCAGATGCGGCTGCAGAAGAAGCAAGGCTCAGGGAGGAG TTTGAGAAAGAAGGAAGGATTCTTCCTCCAAAGGAGGAGTCAAAAACCTTTGATTCCAACGTCATTACTCCTGGAACTCCATTTATGGCGGTTCTCTCAG TTGCTTTGCAGTATTATATCCATCTTAGATTGAACTATGATCCTGGATGGAAGAACATTAAGGTTATTCTTTCAGACGCAAATGTTCCCGGTGAAGGGGA ACACAAGATTATGTCATATATCCGTCTCCAAAGAAATCTTTCTGGTTATGATCCAAACACGTGCCACTGCTTGTATGGTTGTCTTTACTCCTGGAAGCAA GACAAATGCTTCCTGTGTGGTCAAATGGGCCATTTAGCTGCAGATTGTGAGGGAAAAGAAAAAAAGAAGGCTGGGGAATTTGATGAGAAAGGTGGAGAAG TTTCTGTAGCTAAGAAGCCATACCAGTTCCTGAACATCTGGACTTTGAGGGAGTATCTGGAATTTGAAATGAGAATTCCCAATCCTCCATTTGAAATTGA TTTGGAGCGAATTGTCGATGATTTCATCTTCATCTGTTTCTTTGTCGGAAATGATTTTCTACCACATATGCCGACTCTGGAGATTCGTGAGGGTGCCATT AACTTGCTGATTGCAGTATACAAGAAGGAATTCAAATCATTGGGTGGGTACTTGACCAATGGTTGTAAGCCAAATTTAAGCAGGGTTGAGCATTTTATAC AAGCAGTAGGATCATTTGAAGATCAGATATTTCAGAAGAGAGCCCGGTTGCACCAGCGTCAGACAGAAAGAATCAAGCGTGAAAAGGCACAAGTTAGAAA AGGGGATGACGTTGCACCTCAAATGCAGCCAGATTCATTGGTTCCAGTTGCTAGATTTCATGGTTCTCGTCTAGCATCAGCTTCAGCCCCATCACCATAC GAGCAAACCTCTGCAAGTTCAAATGTCAATGCGAAAAGGAAACATTCATTGAGTTCTGATGATGATGGATCCCCTGGAAAACCTCATAAAGTTGTTCGAT TGTCGTCAGTAGCCAACACTGGAGCAGCCATTGTGGAAGCAGAGAATAGCCTGGAAATAGAAGTACAAGAAACCAAAGAAGAATTTAAAACTAAGTTGAA AGAGTTACTTCGTGAGAAAGCTGATGTCTTTAACTCGGAACATGGAGGAGAAGACAAGATTAAACTTGGTGAGCCAGGATGGAAGGAGAGGTACTATGAA GAGAAGTTTTCTGCAAAAACTCTAGAGGAACTTGAAAGTGTTCGAAAAGATGTTGTCTTAAAATATACAGAAGGTCTATGTTGGGTTATGCATTATTACT ATGAAGGAGTTTGTTCTTGGCGCTGGTTCTATCCCTATCATTATGCACCCTTTGCTTCTGATCTCAAGGACCTTTCTCAGCTGGAGATAAAGTTTGATAT GGGTTCTCCTTTCAAACCATTCAATCAGCTTTTGGGAGTGTTTCCTGCTGCAAGAGCCTTAACTTCTATCACTTTAATAGATTTCGAAGTTGACATGAAC GGGAAGCGGTTTGCATGGCAGGGTATTGTAAAACTTCCATTTATTGATGAGGCTCGGCTTCTTGCTGAGGTTGAGAAAGTCGAACATACTTTAACGGAGG AGGAAGCAAGAAGGAACAGTTTTATGTTCGACGTGCTTTTTGTTTCCTCATCTCATACTCTGGCGCAGTGCATATATTTGCTGGACAACCAATCTAAACT ATTAACAGACATTGAGAGAACTGATGTTAAGGAACGCATAAACCCTCAATCAAGTGATGGGATGAATGGCTATATATCCCCTTGTGCTGGAGATACTCAC CCTCCAGTATTTAGGTCTCCGGTCGCGGGCATGGACGACATATTGGATAATGAAGTCATACTCCCTGATTACCATAAACACATTACTCGACCACTTCCTG GGGTTAGGTTCCCTAAAAAGATTGTGAGTTTGGAAGACATGAAGCCTGATCCTGTTCTTTGGCATGAAGATTCTGGGAGGAGGCCTTGGGATTTCCGCCA CAGGCCAAATATCCATGGAAGTGCATCACATAGACTTGTTAACAATAGCTTGCAGTTGAATAGAGGTGGGAATGAGTACATCAATCATATGCTCAGTCTA CTATCTCACGATGCCAGGCCGTACGTTCCTACTGGAAACTCAAATGGAATTCACCATCAAGGTCGACCTATGATGGGAAGATTTGGAGCTGCAGATCATT CAAGGCACCATCGCCAATCTCTGAATCCAATTGGTATACCACCTCCCAACTACGAACAAAGACATGGTTCAGCTCGTGCCCCAGCTCCGCGATTTGCAGG CTCTCCGGTGTATGAGAGAGAGAACCATTACAATCAAGGATATTATGCACAAGGATTTCAGCAGGGTAATGGGCATCGATTCATTCCCCAACATGTGCTC CATCCGCCTGCTACATCTGATGGCTACCGAATTCCTCAGCCGCCTGCATGCAGGAGTTATCAACATCCTAGCGGGGGGTTAGCCGTGCAAGGAGGCAGCC TTAGCATTCCATATGGATATGGCCATCACCAACATAACAGCAACCGGTTTCCGGCATTAGACCAAGGATGGAGCAGAGTGCCTCCGCCACACCTGCATGG AGGAAGGAATAATCACCAGCTGCCTCTGTTGCCACCACCAGGGCCTCGATATATGAGACTGCCTTACCCGCCTGCACCACCATCCAGCTACAATCGGCTT TAA
AA sequence Show only first row Show all	>Lus10034514 pacid=23162879 polypeptide=Lus10034514 locus=Lus10034514.g ID=Lus10034514.BGIv1.0 annot-version=v1.0 MSFGKDIALLNALKVFLMEVAMRWEKITAAVGGKSNSSTTMTTFHFSRFHLLSHFVLPAEGGATNGVAPRAKMNQQRSRRFRAAKDASDAAAEEARLREE FEKEGRILPPKEESKTFDSNVITPGTPFMAVLSVALQYYIHLRLNYDPGWKNIKVILSDANVPGEGEHKIMSYIRLQRNLSGYDPNTCHCLYGCLYSWKQ DKCFLCGQMGHLAADCEGKEKKKAGEFDEKGGEVSVAKKPYQFLNIWTLREYLEFEMRIPNPPFEIDLERIVDDFIFICFFVGNDFLPHMPTLEIREGAI NLLIAVYKKEFKSLGGYLTNGCKPNLSRVEHFIQAVGSFEDQIFQKRARLHQRQTERIKREKAQVRKGDDVAPQMQPDSLVPVARFHGSRLASASAPSPY EQTSASSNVNAKRKHSLSSDDDGSPGKPHKVVRLSSVANTGAAIVEAENSLEIEVQETKEEFKTKLKELLREKADVFNSEHGGEDKIKLGEPGWKERYYE EKFSAKTLEELESVRKDVVLKYTEGLCWVMHYYYEGVCSWRWFYPYHYAPFASDLKDLSQLEIKFDMGSPFKPFNQLLGVFPAARALTSITLIDFEVDMN GKRFAWQGIVKLPFIDEARLLAEVEKVEHTLTEEEARRNSFMFDVLFVSSSHTLAQCIYLLDNQSKLLTDIERTDVKERINPQSSDGMNGYISPCAGDTH PPVFRSPVAGMDDILDNEVILPDYHKHITRPLPGVRFPKKIVSLEDMKPDPVLWHEDSGRRPWDFRHRPNIHGSASHRLVNNSLQLNRGGNEYINHMLSL LSHDARPYVPTGNSNGIHHQGRPMMGRFGAADHSRHHRQSLNPIGIPPPNYEQRHGSARAPAPRFAGSPVYERENHYNQGYYAQGFQQGNGHRFIPQHVL HPPATSDGYRIPQPPACRSYQHPSGGLAVQGGSLSIPYGYGHHQHNSNRFPALDQGWSRVPPPHLHGGRNNHQLPLLPPPGPRYMRLPYPPAPPSSYNRL

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G75660		AtXRN3, XRN3	5'-3' exoribonuclease 3 (.1)		Lus10034514 [exp]	0	1
AT1G01050		ATPPA1	pyrophosphorylase 1 (.1)		Lus10005139 [exp]	5.9	0.7414
AT4G12560		CPR1, CPR30	CONSTITUTIVE EXPRESSER OF PR G...		Lus10027322 [exp]	18.2	0.6803
AT1G13680			PLC-like phosphodiesterases su...		Lus10000649 [exp]	20.9	0.7068
AT2G23945			Eukaryotic aspartyl protease f...		Lus10031113 [exp]	26.7	0.7057
AT5G44390			FAD-binding Berberine family p...		Lus10042382 [exp]	28.6	0.7051
					Lus10009892 [exp]	32.6	0.7047
					Lus10019151 [exp]	38.4	0.7030
AT3G44970			Cytochrome P450 superfamily pr...		Lus10013060 [exp]	42.2	0.6997
AT4G39830			Cupredoxin superfamily protein...		Lus10009603 [exp]	42.5	0.6993
AT3G08990			Yippee family putative zinc-bi...		Lus10004823 [exp]	46.1	0.6961

Compare expression of checked genes

Lus10034514 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.