Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G31790 442 / 2e-158 Tetrapyrrole (Corrin/Porphyrin) Methylases (.1), Tetrapyrrole (Corrin/Porphyrin) Methylases (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033155 [exp] 158 / 9e-49 AT4G31790 128 / 2e-37 Tetrapyrrole (Corrin/Porphyrin) Methylases (.1), Tetrapyrrole (Corrin/Porphyrin) Methylases (.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G023700 [exp] 474 / 5e-171 AT4G31790 466 / 6e-168 Tetrapyrrole (Corrin/Porphyrin) Methylases (.1), Tetrapyrrole (Corrin/Porphyrin) Methylases (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00590 [flax] [poplar] TP_methylase Tetrapyrrole (Corrin/Porphyrin) Methylases
Representative CDS sequence Show only first row Show all	>Lus10034516 pacid=23162892 polypeptide=Lus10034516 locus=Lus10034516.g ID=Lus10034516.BGIv1.0 annot-version=v1.0 ATGCTGTACATAATAGGACTGGGATTGGGCGACGAGAAGGACATAACTCTACGAGGTCTAGAAGCAGTGAAGAAATGCGATAAAGTGTTCGTCGAAGCCT ACACTTCTCTTCTGTCCTTTGGCCTCTCCTCCGACGGAATCTCAACTCTCGAAAACCTGTACGGCAAGCCGATTACAATAGCCGATAGAGAGATGGTGGA AGAGAAGGCCGACGAGATTCTGTCCGACGCTCGTACATCCGACGTCGCCTTCCTTGTCGTCGGAGATCCCTTCGGAGCTACGACACACAGTGATCTTGTG GTTCGAGCTAGGGAATTAGGGGTTACTGTGAAGGTAGTGCACAATGCATCTGTGATGAATGCTATTGGGATTTGTGGATTGCAACTCTACCGTTATGGTG AGACTGTCTCCATTCCCTTCTTCACAGATGTTTGGAGGCCTGATAGCTTCTACGAGAAGATTCAGAAGAATAGGGAGCTTGGATTGCACACTCTCTGCTT GTTAGGTGAGATGAGCTTGGATGCTTCCCCCTCATATTCGAGTGAAGAGCCTACATGGGAGTCTTTGTCGAGAGGGAAGAAGAAGTATGAACCACCGAGG TACATGACGATAAACACTGCAATTGAGCAGCTGCTGGAAGTCGTTCAGAATCGTGGAGGATCTGCATATGATGAAGATACAGATTGCGTTGGGTTTGCTA GGATCGGAAGTGAGGATCAGACAATAGTGGCAGGGACAATGAAGCAACTTCTTTCAGTTGATTTTGGAGCACCTCTACATTGCCTGGTGATCACCGGCCA GACGCATCCATTAGAGGAAGAAATGCTGCGTATCTACAGACAGTAA
AA sequence Show only first row Show all	>Lus10034516 pacid=23162892 polypeptide=Lus10034516 locus=Lus10034516.g ID=Lus10034516.BGIv1.0 annot-version=v1.0 MLYIIGLGLGDEKDITLRGLEAVKKCDKVFVEAYTSLLSFGLSSDGISTLENLYGKPITIADREMVEEKADEILSDARTSDVAFLVVGDPFGATTHSDLV VRARELGVTVKVVHNASVMNAIGICGLQLYRYGETVSIPFFTDVWRPDSFYEKIQKNRELGLHTLCLLGEMSLDASPSYSSEEPTWESLSRGKKKYEPPR YMTINTAIEQLLEVVQNRGGSAYDEDTDCVGFARIGSEDQTIVAGTMKQLLSVDFGAPLHCLVITGQTHPLEEEMLRIYRQ

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G31790			Tetrapyrrole (Corrin/Porphyrin...		Lus10034516 [exp]	0	1
AT2G29980		AtFAD3, FAD3	fatty acid desaturase 3 (.1.2)		Lus10036184 [exp]	1.4	0.8154
AT1G09640			Translation elongation factor ...		Lus10007150 [exp]	8.8	0.7432
AT1G50920			Nucleolar GTP-binding protein ...		Lus10038748 [exp]	14.7	0.7456
AT3G48680		AtCAL2, GAMMACA...	gamma carbonic anhydrase-like ...		Lus10031847 [exp]	16.6	0.7904
AT5G22100			RNA cyclase family protein (.1...		Lus10004092 [exp]	21.8	0.7675
AT5G62440			Protein of unknown function (D...		Lus10023594 [exp]	22.2	0.7557
AT5G24510			60S acidic ribosomal protein f...		Lus10002680 [exp]	24.7	0.7333
AT3G20050		ATTCP-1	T-complex protein 1 alpha subu...		Lus10036713 [exp]	25.8	0.7110
AT5G47400			unknown protein		Lus10004740 [exp]	28.1	0.7499
AT3G14240			Subtilase family protein (.1)		Lus10034178 [exp]	31.2	0.7493

Compare expression of checked genes

Lus10034516 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.