Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G14240 204 / 1e-61 Subtilase family protein (.1) AT5G67360 150 / 2e-42 ARA12 Subtilase family protein (.1) AT4G34980 148 / 1e-41 SLP2 subtilisin-like serine protease 2 (.1) AT3G14067 145 / 1e-40 Subtilase family protein (.1) AT5G51750 138 / 5e-38 ATSBT1.3 subtilase 1.3 (.1) AT1G01900 133 / 2e-36 SBTI1.1, ATSBT1.1 subtilase family protein (.1) AT2G05920 131 / 1e-35 Subtilase family protein (.1) AT1G04110 126 / 9e-34 SDD1 STOMATAL DENSITY AND DISTRIBUTION, Subtilase family protein (.1) AT2G04160 117 / 2e-30 AIR3 AUXIN-INDUCED IN ROOT CULTURES 3, Subtilisin-like serine endopeptidase family protein (.1) AT5G45650 113 / 3e-29 subtilase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037449 [exp] 235 / 2e-73 AT3G14240 1177 / 0.0 Subtilase family protein (.1) Lus10013187 [exp] 233 / 1e-72 AT3G14240 1175 / 0.0 Subtilase family protein (.1) Lus10034178 [exp] 205 / 4e-66 AT3G14240 240 / 4e-73 Subtilase family protein (.1) Lus10011089 [exp] 149 / 8e-42 AT5G67360 1108 / 0.0 Subtilase family protein (.1) Lus10011537 [exp] 147 / 5e-41 AT5G67360 1117 / 0.0 Subtilase family protein (.1) Lus10019285 [exp] 146 / 8e-41 AT5G67360 1105 / 0.0 Subtilase family protein (.1) Lus10007765 [exp] 145 / 2e-40 AT5G67360 990 / 0.0 Subtilase family protein (.1) Lus10036546 [exp] 142 / 2e-39 AT1G01900 822 / 0.0 subtilase family protein (.1) Lus10041382 [exp] 141 / 6e-39 AT1G01900 825 / 0.0 subtilase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G071800 [exp] 204 / 9e-62 AT3G14240 1199 / 0.0 Subtilase family protein (.1) Potri.001G163600 [exp] 203 / 1e-61 AT3G14240 1174 / 0.0 Subtilase family protein (.1) Potri.004G173900 [exp] 159 / 2e-45 AT4G34980 1108 / 0.0 subtilisin-like serine protease 2 (.1) Potri.009G133400 [exp] 155 / 5e-44 AT4G34980 1121 / 0.0 subtilisin-like serine protease 2 (.1) Potri.002G120400 [exp] 148 / 2e-41 AT5G67360 966 / 0.0 Subtilase family protein (.1) Potri.014G018900 [exp] 146 / 6e-41 AT5G67360 994 / 0.0 Subtilase family protein (.1) Potri.014G074600 [exp] 145 / 2e-40 AT1G01900 788 / 0.0 subtilase family protein (.1) Potri.005G145300 [exp] 144 / 2e-40 AT5G67360 932 / 0.0 Subtilase family protein (.1) Potri.012G131500 [exp] 142 / 1e-39 AT5G51750 1102 / 0.0 subtilase 1.3 (.1) Potri.015G133800 [exp] 142 / 1e-39 AT5G51750 1113 / 0.0 subtilase 1.3 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00082 [flax] [poplar] Peptidase_S8 Subtilase family
Representative CDS sequence Show only first row Show all	>Lus10034517 pacid=23162902 polypeptide=Lus10034517 locus=Lus10034517.g ID=Lus10034517.BGIv1.0 annot-version=v1.0 ATGAATCCTGATGCTTCGAACTTGGGGGGTCGGATTTCGGCTCCGACCTTATCATCGCCGTCATCGACACTGGCATCTCCCCCCACCATCCTTCCTTCCA CGACCTCCCGTACCTCTCAAATGGAAGGATCTTGCTCCCCAACTCCCGATTTCCCTCCTTCCTCCTGCAATCGGAAGCTCGTCGGCGCCAGATTCTTCTC CGCTGGGTATGAAGCCACTAACGGGAAAATGAACGAGACTTCCGAGTTCCGTTCCCCTCGTGATTCCGACGGTCACGGTAAGACTTCCGAGTTCCGTCCC CCTCGTGCTTCCGACGGTCACGGTACTCACACTGCTTCAATCGCTGCTGGCCGCTACGTTTGCCCCGCTTCCACTCTCGGGTACGCTCGTGGACTCGCTG CTGGTATGGCTCCTAAAGCTAGACTCGCTGTCTATAAAGTCTGCTGGACTGCTGGCTGCTACGATTCCGATATCCTCGCTGCGTTTGACGCCGCCGTCAC CGACGGCGTCGACGTCATTTCTCTTAGCGTCGGGGGGGGTTGGGGGGGATAG
AA sequence Show only first row Show all	>Lus10034517 pacid=23162902 polypeptide=Lus10034517 locus=Lus10034517.g ID=Lus10034517.BGIv1.0 annot-version=v1.0 MNPDASNLGGRISAPTLSSPSSTLASPPTILPSTTSRTSQMEGSCSPTPDFPPSSCNRKLVGARFFSAGYEATNGKMNETSEFRSPRDSDGHGKTSEFRP PRASDGHGTHTASIAAGRYVCPASTLGYARGLAAGMAPKARLAVYKVCWTAGCYDSDILAAFDAAVTDGVDVISLSVGGGWGG

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G14240			Subtilase family protein (.1)		Lus10034517 [exp]	0	1
AT3G14240			Subtilase family protein (.1)		Lus10034178 [exp]	1.0	0.9684
AT3G48680		AtCAL2, GAMMACA...	gamma carbonic anhydrase-like ...		Lus10031847 [exp]	1.4	0.9576
AT3G14240			Subtilase family protein (.1)		Lus10037449 [exp]	2.4	0.9106
AT3G14240			Subtilase family protein (.1)		Lus10017301 [exp]	3.5	0.8831
AT5G52180			unknown protein		Lus10015101 [exp]	4.5	0.8839
AT2G17800		ARAC1, ATGP2, A...	RHO-RELATED GTPASES FROM PLANT...		Lus10041881 [exp]	5.7	0.8808
AT1G50420	GRAS	SCL-3, SCL3	scarecrow-like 3 (.1)		Lus10022418 [exp]	8.1	0.8653
AT3G06720		IMPA1, IMPA-1, ...	importin alpha isoform 1 (.1.2...		Lus10036330 [exp]	8.7	0.8228
AT3G14240			Subtilase family protein (.1)		Lus10013187 [exp]	9.6	0.9022
AT5G62440			Protein of unknown function (D...		Lus10023594 [exp]	10.5	0.8452

Compare expression of checked genes

Lus10034517 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.