Plant FIBer expression Database

Lus10034518 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues

No hit found

Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10038704
[exp]
0 / 1 ND /
Poplar homologues

No hit found
PFAM info
Representative CDS sequence
>Lus10034518 pacid=23162776 polypeptide=Lus10034518 locus=Lus10034518.g ID=Lus10034518.BGIv1.0 annot-version=v1.0
ATGATAGGTCGCGCGGTGCGAAACTCTTCGAATGTCGAAAGGTCGAACATGACCTCGAAGCTTGGTGCTACTCCCGAAACGACACAATCACGGGGGATGC
TACTCCTGGAGGACCGAAGCGTCCCAGATAGGGCAGTGGGCTCGAGAAAGAAGGCATTGGACAGGATACTGGTCGAAAGCCGATCAAGTTTCCGAAGAAG
GGAGGTGTGCCTCATGGTCTCGAATTTCACGTGGATCTACTGGAGGCAGCCAGTGATCTGGAGTGAAGATTGGTGGTGGGATGCCGCACTACCCTCTCCA
AGTTGGGTTAATACACGGAAACGTCCTACATCCATTCATCTCATCATCTCCCACATCTCAACAAGCCACAAACCTCGTTCAACCGGCATCCAACCATCAT
CCATCACTCCATCCGTCCGAACCATCCCACCGGCCGAAGGTTTCATCAGGCCCCCGAAACACGGAAATCAGATCGGCCAGCTGAAATCGAGGGACACTAA
CCTGCGCAAGGAATCAATGGCGACGGCAAAGCAGCAGGCGGCAGAAATGGCGCAAGCTGAGCCGAAGACGACGTCGGAAACCATGGCTTCCACCGAGACA
GATTCAGAGCTGGTTAGACTATCTAAATCACCCAAGAAGGATGGTCTCGGAAACTCGCAGGGGATACAGGCGGGACACACCAGTGCATCGACATAA
AA sequence
>Lus10034518 pacid=23162776 polypeptide=Lus10034518 locus=Lus10034518.g ID=Lus10034518.BGIv1.0 annot-version=v1.0
MIGRAVRNSSNVERSNMTSKLGATPETTQSRGMLLLEDRSVPDRAVGSRKKALDRILVESRSSFRRREVCLMVSNFTWIYWRQPVIWSEDWWWDAALPSP
SWVNTRKRPTSIHLIISHISTSHKPRSTGIQPSSITPSVRTIPPAEGFIRPPKHGNQIGQLKSRDTNLRKESMATAKQQAAEMAQAEPKTTSETMASTET
DSELVRLSKSPKKDGLGNSQGIQAGHTSAST

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
Lus10034518
[exp]
0 1
AT1G47670 Transmembrane amino acid trans... Lus10011668
[exp]
10.8 0.7635
AT1G61680 ATTPS14 terpene synthase 14 (.1.2) Lus10018392
[exp]
17.2 0.7516
AT4G24780 Pectin lyase-like superfamily ... Lus10013666
[exp]
26.1 0.7582
AT2G40460 Major facilitator superfamily ... Lus10029063
[exp]
27.3 0.7096
AT1G47670 Transmembrane amino acid trans... Lus10032751
[exp]
27.4 0.7458
AT1G69530 ATHEXPALPHA1.2,... EXPANSIN 1, expansin A1 (.1.2.... Lus10037164
[exp]
27.6 0.7439
AT1G66830 Leucine-rich repeat protein ki... Lus10017611
[exp]
27.9 0.7546
AT1G69530 ATHEXPALPHA1.2,... EXPANSIN 1, expansin A1 (.1.2.... Lus10036763
[exp]
28.6 0.7215
AT4G32630 ArfGap/RecO-like zinc finger d... Lus10022113
[exp]
37.3 0.7194
AT2G03060 MADS AGL30 AGAMOUS-like 30 (.1.2) Lus10030450
[exp]
39.8 0.7458

Lus10034518 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.