Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G42560 279 / 1e-93 Abscisic acid-responsive (TB2/DP1, HVA22) family protein (.1), Abscisic acid-responsive (TB2/DP1, HVA22) family protein (.2), Abscisic acid-responsive (TB2/DP1, HVA22) family protein (.3) AT1G75700 261 / 1e-88 HVA22G HVA22-like protein G (.1) AT1G19950 264 / 2e-87 HVA22H HVA22-like protein H (ATHVA22H) (.1) AT2G36020 196 / 1e-61 HVA22J HVA22-like protein J (.1) AT4G36720 62 / 3e-11 HVA22K HVA22-like protein K (.1) AT5G50720 53 / 1e-08 ATHVA22E ARABIDOPSIS THALIANA HVA22 HOMOLOGUE E, HVA22 homologue E (.1) AT4G24960 52 / 4e-08 ATHVA22D ARABIDOPSIS THALIANA HVA22 HOMOLOGUE D, HVA22 homologue D (.1.2.3) AT2G42820 52 / 5e-08 HVA22F HVA22-like protein F (.1) AT1G74520 50 / 2e-07 ATHVA22A HVA22 homologue A (.1) AT1G69700 49 / 8e-07 ATHVA22C HVA22 homologue C (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033152 [exp] 420 / 2e-149 AT5G42560 328 / 7e-113 Abscisic acid-responsive (TB2/DP1, HVA22) family protein (.1), Abscisic acid-responsive (TB2/DP1, HVA22) family protein (.2), Abscisic acid-responsive (TB2/DP1, HVA22) family protein (.3) Lus10024332 [exp] 329 / 3e-113 AT5G42560 330 / 9e-114 Abscisic acid-responsive (TB2/DP1, HVA22) family protein (.1), Abscisic acid-responsive (TB2/DP1, HVA22) family protein (.2), Abscisic acid-responsive (TB2/DP1, HVA22) family protein (.3) Lus10004215 [exp] 194 / 2e-62 AT2G36020 196 / 6e-64 HVA22-like protein J (.1) Lus10016974 [exp] 196 / 4e-62 AT2G36020 210 / 2e-68 HVA22-like protein J (.1) Lus10021299 [exp] 194 / 4e-61 AT2G36020 206 / 6e-67 HVA22-like protein J (.1) Lus10029419 [exp] 177 / 2e-54 AT2G36020 198 / 1e-63 HVA22-like protein J (.1) Lus10010093 [exp] 68 / 2e-13 AT4G36720 202 / 2e-66 HVA22-like protein K (.1) Lus10007215 [exp] 67 / 3e-13 AT4G36720 196 / 2e-64 HVA22-like protein K (.1) Lus10043186 [exp] 62 / 1e-11 AT5G50720 169 / 1e-55 ARABIDOPSIS THALIANA HVA22 HOMOLOGUE E, HVA22 homologue E (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G237900 [exp] 296 / 2e-100 AT5G42560 274 / 1e-91 Abscisic acid-responsive (TB2/DP1, HVA22) family protein (.1), Abscisic acid-responsive (TB2/DP1, HVA22) family protein (.2), Abscisic acid-responsive (TB2/DP1, HVA22) family protein (.3) Potri.002G023500 [exp] 292 / 5e-99 AT5G42560 296 / 2e-100 Abscisic acid-responsive (TB2/DP1, HVA22) family protein (.1), Abscisic acid-responsive (TB2/DP1, HVA22) family protein (.2), Abscisic acid-responsive (TB2/DP1, HVA22) family protein (.3) Potri.004G166800 [exp] 230 / 3e-75 AT1G75700 234 / 3e-78 HVA22-like protein G (.1) Potri.006G205300 [exp] 211 / 1e-67 AT2G36020 228 / 1e-74 HVA22-like protein J (.1) Potri.016G072600 [exp] 204 / 1e-65 AT2G36020 210 / 9e-69 HVA22-like protein J (.1) Potri.009G113400 [exp] 72 / 4e-15 AT4G36720 241 / 1e-81 HVA22-like protein K (.1) Potri.007G029300 [exp] 69 / 1e-13 AT4G36720 252 / 2e-85 HVA22-like protein K (.1) Potri.015G099700 [exp] 55 / 2e-09 AT5G50720 166 / 5e-54 ARABIDOPSIS THALIANA HVA22 HOMOLOGUE E, HVA22 homologue E (.1) Potri.012G101600 [exp] 54 / 4e-09 AT5G50720 133 / 3e-41 ARABIDOPSIS THALIANA HVA22 HOMOLOGUE E, HVA22 homologue E (.1) Potri.015G062800 [exp] 54 / 1e-08 AT1G74520 255 / 4e-88 HVA22 homologue A (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03134 [flax] [poplar] TB2_DP1_HVA22 TB2/DP1, HVA22 family
Representative CDS sequence Show only first row Show all	>Lus10034519 pacid=23162849 polypeptide=Lus10034519 locus=Lus10034519.g ID=Lus10034519.BGIv1.0 annot-version=v1.0 ATGCTTGGATCTTTCATTACTAGAGGACTTGTGTTGATTTTCGGCTATGCTTATCCAGCATATGAGTGCTATAAAACTGTTGAGTTGAATAAACCGGAGA TTGAGCAGCTTCGCTTTTGGTGCCAGTATTGGATTTTGGTTGCTCTTTTGACCGTTAGTGAGAGAATTGGAGATGCTTTCATTTCATGGGTTCCAATGTA TAGTGAAGCTAAGTTGGCATTTTTCATATACTTGTGGTACCCTAAAACCAAGGGAACTACGTACGTATATGATTCCTTCTTCAGACCATACATTGCTAAA CACGAAAATGAAATTGATCGCAACCTGCTGGAGCTGAAGACAAGGGCTGGAGACATGGCAATAGTGTACTGGCAAAGAGCTGCAAGCTACTGTCAAACGA GAGTTTTTGAAATTTTGCATTATATTGCTGCTCAATCAACACCAGTACCTCGCGCTGCAGAGCAGCAGCAACAAGGTCCTAGAGCTCGCCAAGCTCCCAA TGAACCTTCCACTGCTGCGTCGAAACCAGCGACGGTGGAACCAATTCCATCTCCCAGTAGCAGCGCATCATCAAGTCAGAATCACATGGAAGTAGATGAA GAGGTGAGCTCTGAATCCTCTAAACCCATTTCGGCCGCAGCTGCAAACCCAGCAAAGGCTCCTCCAACTACAGCAAAAGCTCCCAACATAGCAAGGTCAG TTTCTGCTCCATCTGAACCTTCCAACACTTCTGTACCAGACAAGACGAAGGAAGGAATGCAGGTTGAAGCAGCCGCAGCGGGACCATCAAACGAGCTTGC CCCAAAAGAGACAGTAATGGGCGAGGCGATTCGCATGACTCGTGGAAGATTGAGGAAAACCAGATCCGGTGCCAAGTGA
AA sequence Show only first row Show all	>Lus10034519 pacid=23162849 polypeptide=Lus10034519 locus=Lus10034519.g ID=Lus10034519.BGIv1.0 annot-version=v1.0 MLGSFITRGLVLIFGYAYPAYECYKTVELNKPEIEQLRFWCQYWILVALLTVSERIGDAFISWVPMYSEAKLAFFIYLWYPKTKGTTYVYDSFFRPYIAK HENEIDRNLLELKTRAGDMAIVYWQRAASYCQTRVFEILHYIAAQSTPVPRAAEQQQQGPRARQAPNEPSTAASKPATVEPIPSPSSSASSSQNHMEVDE EVSSESSKPISAAAANPAKAPPTTAKAPNIARSVSAPSEPSNTSVPDKTKEGMQVEAAAAGPSNELAPKETVMGEAIRMTRGRLRKTRSGAK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G42560			Abscisic acid-responsive (TB2/...		Lus10034519 [exp]	0	1
AT5G42560			Abscisic acid-responsive (TB2/...		Lus10033152 [exp]	1.7	0.8626
AT4G27060		CN, SPR2, TOR1	TORTIFOLIA 1, SPIRAL 2, CONVOL...		Lus10011149 [exp]	2.0	0.8653
AT1G69420			DHHC-type zinc finger family p...		Lus10036798 [exp]	3.5	0.8641
AT5G48800			Phototropic-responsive NPH3 fa...		Lus10038169 [exp]	5.5	0.8528
AT4G17950	AT-hook		AT hook motif DNA-binding fami...		Lus10040085 [exp]	8.8	0.8452
AT4G23740			Leucine-rich repeat protein ki...		Lus10032351 [exp]	11.8	0.8536
AT1G49890		QWRF2	QWRF domain containing 2, Fami...		Lus10014636 [exp]	13.0	0.8468
AT2G16640		ATTOC132, TOC13...	multimeric translocon complex ...		Lus10034170 [exp]	13.7	0.8308
AT3G53380			Concanavalin A-like lectin pro...		Lus10019923 [exp]	14.0	0.8562
AT2G47500			P-loop nucleoside triphosphate...		Lus10009851 [exp]	15.9	0.8453

Compare expression of checked genes

Lus10034519 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.