Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G45730 509 / 1e-179 eukaryotic initiation factor 3 gamma subunit family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033150 [exp] 681 / 0 AT2G45730 432 / 4e-150 eukaryotic initiation factor 3 gamma subunit family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G023300 [exp] 598 / 0 AT2G45730 529 / 0.0 eukaryotic initiation factor 3 gamma subunit family protein (.1) Potri.005G238200 [exp] 593 / 0 AT2G45730 512 / 0.0 eukaryotic initiation factor 3 gamma subunit family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04189 [flax] [poplar] Gcd10p Gcd10p family
Representative CDS sequence Show only first row Show all	>Lus10034521 pacid=23162840 polypeptide=Lus10034521 locus=Lus10034521.g ID=Lus10034521.BGIv1.0 annot-version=v1.0 ATGTTCAACAGCACCGTTCAGCCGGATTCAATCCCGAGCTCCAGAGTGGCCTCGGAAGGTAGCAGTGTGTTGCTCGACGTCAACGACGGTGACCGCCTAG TTTTCTCACGGCTTACTTCCGGGGCGACTCTGAAAATTGGCAATAAGAACTACTCATTGAAACCGTTGATTGGCTGTCCTTTCGGCTCTTTGTTTCAAGT TGAGAATGGAGCTGAAGGTTCATATTTGGCTCGAGTTACTCCATCTGAAGGAGAGGATTTTGTCCAAGAGAAAGGAGAATGTGAATTAACAGACGAGTCG AGGGATAATCGTGGTTTAGTTGATGATAATAAAGCTCAAACTCTCACTGGTGATGACATTGATGAAATGCGCAGACAAGGTGCTAAAGGTGATGAAATCA TTGAAGCTCTAATTGCCAACAGTGCAACCTTCGGGAAGAAGACTGTGTTTTCTCAAGAAAAATACAGGATAAAAAAGCAGAAGAAATATGCTCCTAGAGT ACTTCTGAGGAGACCTTTTACCAGAAGCATATGCGAGGCTTACTTCAAAAAGTATCCTACCAGAATTGGATTCCTTCGTGTTGACACACTATCCCTGTTG CTGTCTCTGGCTAATGTTGGTGCAAACTCAGATGTTCTTGTTGTCGATATGGTTGGTGGTCTAGTTACTGGTGCTGTAGCCGAACGTTTAGGAGGCACAG GTTGTGTGTGCAATACATATCTTGGAAGTGCACCATATTCCATGGAAATAGTGAGAATATTCAATTTCAATGATAAAATTTGCAAGAGGATTGTGCGGGC TTCACTTGATGACTTGTGTTCAGCTCAACCTGAGACTTCCGAGCAAGTTGATAAGCATGAAAGTGAAAATCATATGGAACTGCAGGCAACCATCACTATG GAAGATACATCTCTTTCATCCGATCATGGGGTGGTAGATGCAAGTGCAGAGACTACTGCGAAGACGATCAAAATCAATAAAACGCCTAAACATGGAGAGA AGCCATCACGTGAGACCTTTCAGCAGTGGAAAGAACAAGGTTTCTCTAGCTTAATAATTGCTGCACCTGATCTAGATCCGTGGAGTGCCGTTAAAAGACT GCTTCCACTTCTGTCATATTCCGCTCCCTTTGCTGTTTATCACCAATATCTCCAGCCGCTAGCGACATGCATGCACAATTTACAAGTCGAGAAAATGGCT ATCGGTTTGCAACTTTCTGAACCCTGGCTTCGCGAGTATCAGGTTCTTCCGTCGAGAACTCATCCGTTTATGCAAATGAATGCATCCGGAGGCTACGTTC TAAGTGGCACCAGGATATCTACTGCAGCTAATGACACCTCGAGATCATGA
AA sequence Show only first row Show all	>Lus10034521 pacid=23162840 polypeptide=Lus10034521 locus=Lus10034521.g ID=Lus10034521.BGIv1.0 annot-version=v1.0 MFNSTVQPDSIPSSRVASEGSSVLLDVNDGDRLVFSRLTSGATLKIGNKNYSLKPLIGCPFGSLFQVENGAEGSYLARVTPSEGEDFVQEKGECELTDES RDNRGLVDDNKAQTLTGDDIDEMRRQGAKGDEIIEALIANSATFGKKTVFSQEKYRIKKQKKYAPRVLLRRPFTRSICEAYFKKYPTRIGFLRVDTLSLL LSLANVGANSDVLVVDMVGGLVTGAVAERLGGTGCVCNTYLGSAPYSMEIVRIFNFNDKICKRIVRASLDDLCSAQPETSEQVDKHESENHMELQATITM EDTSLSSDHGVVDASAETTAKTIKINKTPKHGEKPSRETFQQWKEQGFSSLIIAAPDLDPWSAVKRLLPLLSYSAPFAVYHQYLQPLATCMHNLQVEKMA IGLQLSEPWLREYQVLPSRTHPFMQMNASGGYVLSGTRISTAANDTSRS

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G45730			eukaryotic initiation factor 3...		Lus10034521 [exp]	0	1
AT2G45730			eukaryotic initiation factor 3...		Lus10033150 [exp]	1.0	0.8778
AT1G48360			zinc ion binding;nucleic acid ...		Lus10041269 [exp]	1.4	0.8292
AT5G43990		SDG18, SUVR2	SET DOMAIN PROTEIN 18, SET-dom...		Lus10024946 [exp]	6.9	0.7906
AT4G00490		BAM2, BMY9	BETA-AMYLASE 9, beta-amylase 2...		Lus10030392 [exp]	7.0	0.7948
AT5G39940			FAD/NAD(P)-binding oxidoreduct...		Lus10001121 [exp]	8.3	0.8139
AT4G29540		AtLpxA	bacterial transferase hexapept...		Lus10008565 [exp]	10.1	0.7964
AT3G52210			S-adenosyl-L-methionine-depend...		Lus10038644 [exp]	10.6	0.8021
AT3G07060		EMB1974	embryo defective 1974, NHL dom...		Lus10011867 [exp]	14.7	0.7701
AT4G35520		MLH3, ATMLH3	MUTL protein homolog 3 (.1)		Lus10035985 [exp]	17.5	0.7702
AT5G27680		RECQSIM	RECQ helicase SIM (.1)		Lus10019129 [exp]	18.7	0.7506

Compare expression of checked genes

Lus10034521 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.