Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G75710 422 / 1e-145 C2H2ZnF C2H2-like zinc finger protein (.1) AT4G27240 216 / 1e-65 C2H2ZnF zinc finger (C2H2 type) family protein (.1) AT5G54630 215 / 9e-65 C2H2ZnF zinc finger protein-related (.1) AT2G29660 181 / 1e-52 C2H2ZnF zinc finger (C2H2 type) family protein (.1) AT1G11490 129 / 1e-33 C2H2ZnF zinc finger (C2H2 type) family protein (.1) AT1G62520 118 / 2e-30 unknown protein AT4G22560 114 / 4e-29 unknown protein AT4G12450 107 / 2e-26 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033148 [exp] 647 / 0 AT1G75710 442 / 3e-153 C2H2-like zinc finger protein (.1) Lus10024333 [exp] 450 / 3e-159 AT1G75710 384 / 3e-133 C2H2-like zinc finger protein (.1) Lus10028083 [exp] 273 / 3e-87 AT1G75710 284 / 4e-91 C2H2-like zinc finger protein (.1) Lus10025632 [exp] 266 / 7e-85 AT1G75710 284 / 2e-91 C2H2-like zinc finger protein (.1) Lus10043080 [exp] 228 / 3e-70 AT5G54630 566 / 0.0 zinc finger protein-related (.1) Lus10018219 [exp] 174 / 8e-50 AT2G29660 323 / 4e-108 zinc finger (C2H2 type) family protein (.1) Lus10040685 [exp] 172 / 4e-49 AT2G29660 322 / 9e-108 zinc finger (C2H2 type) family protein (.1) Lus10018388 [exp] 162 / 1e-45 AT5G54630 336 / 5e-112 zinc finger protein-related (.1) Lus10007625 [exp] 154 / 9e-41 AT4G21320 400 / 6e-136 HEAT-STRESS-ASSOCIATED 32, Aldolase-type TIM barrel family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G238300 [exp] 491 / 1e-173 AT1G75710 478 / 5e-168 C2H2-like zinc finger protein (.1) Potri.002G023200 [exp] 471 / 1e-165 AT1G75710 439 / 1e-152 C2H2-like zinc finger protein (.1) Potri.005G173400 [exp] 295 / 5e-96 AT1G75710 291 / 3e-94 C2H2-like zinc finger protein (.1) Potri.002G087500 [exp] 293 / 2e-95 AT1G75710 294 / 2e-95 C2H2-like zinc finger protein (.1) Potri.011G131300 [exp] 218 / 2e-66 AT5G54630 509 / 3e-179 zinc finger protein-related (.1) Potri.001G415600 [exp] 214 / 8e-65 AT5G54630 520 / 0.0 zinc finger protein-related (.1) Potri.009G043900 [exp] 208 / 3e-63 AT2G29660 332 / 4e-112 zinc finger (C2H2 type) family protein (.1) Potri.001G249900 [exp] 208 / 3e-63 AT2G29660 351 / 1e-119 zinc finger (C2H2 type) family protein (.1) Potri.004G030800 [exp] 203 / 4e-61 AT5G54630 385 / 3e-131 zinc finger protein-related (.1) Potri.003G111800 [exp] 126 / 3e-33 AT4G22560 263 / 3e-88 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10034522 pacid=23162724 polypeptide=Lus10034522 locus=Lus10034522.g ID=Lus10034522.BGIv1.0 annot-version=v1.0 ATGGCTATCCTCACCTTCTACCCAGAACAAAAAACCACTACCCCAAAACCTAAATCCAAACCCAAACCCAAACCACCACCCACAACTCCTCCTCCTCCTC ACCACAGAAACAAACAGCCTGATCATCTCAACAAAAAACACCCAAGACCCAAACACAACAAGCATCACCAACCACCTTCCTCATGGGTTGACCAATTCAA GAACCTCCTCACTTGCAAGCAGATTGATTCCGCCGCCGTCCACCGCCCCACCAAATCCACCCCTGCCTCCTCCAAACTCGGGGGCTCATCCTGCAGCTCC ATTTGCAGCTTCAAAGATGTCGTCCACGGAAACACCAGAGTCGTCCACCGCTCTGACCACTCCCCCGATACTAGCTCCCGAGCCCTCCAGGAGTCCTCCC TACTCACCCGAAATAGTAAAGGCGTCAGATATTCCTCCCATACCACGCCGTCCTCATCGTTGGGGAGAGGCATGCAGTTTAGGAAGCTCTCTAGCTGTTA CGAATGTCACACTGCCATTGACCCTCGCAGGTTTCCATCTCCAAGGACCACTATTTGCGCTTGTTCACAATGCGGTGAAATTTTCCCAAAGCCGGAAAGC CTTGAACTCCATCAGAGAATTCGACATGCCGTATCGGAGCTAGGCCCAGAAGATTCGGGCCGGAACATTGTGGAGATAATCTTCAAATCCAGCTGGATGA AGAGAGACAGCTCCATCTGCAAGATCGAACGAATATTGAAGGTCCACAACACCCAAAGAACCATCCAACGGTTCGAAGATTGCAGGGACGCGGTCAAGTC ACGTGCGGTGAACAGCACCCGAAAGAACCCAAGGTGCGCTGCGGACGGCAACGAGCTGCTCCGCTTCTACTGCACCACTCTCACGTGCTCCCTGGGGGCG CGTGGCGGGTCCGGCATTTGCGCCGCCATCCCCGCATGCGGAGTCTGCACCGCTATCCGTCATGGGTTCCAAGGCAAGGAGTTGCGTGGCGTAAGGACCA CCGCTAGCAGCGGCAGGGCCCACGACTCGCTGGTCGTCGGGTGTACAGGGGTTGAGGTGAGGAGGGCGATGCTGGTTTGTCGCGTGATCGCCGGGAGGGT GAAGCGAGTTTCGGCGGCTGGGGAGGACTCGCAGGAAGACGGTGGTGGTTATGGAGGCGCGTATGATTCAGTGGCCGGATGCGAGGGGCTGTACTCGAAT TACTTGGAGGAGTTGTTTGTGTTTAATCCCAAGGCCATTCTGCCTTGTTTTGTCGTCATTTACAAAGCTGTGGAATCTTAG
AA sequence Show only first row Show all	>Lus10034522 pacid=23162724 polypeptide=Lus10034522 locus=Lus10034522.g ID=Lus10034522.BGIv1.0 annot-version=v1.0 MAILTFYPEQKTTTPKPKSKPKPKPPPTTPPPPHHRNKQPDHLNKKHPRPKHNKHHQPPSSWVDQFKNLLTCKQIDSAAVHRPTKSTPASSKLGGSSCSS ICSFKDVVHGNTRVVHRSDHSPDTSSRALQESSLLTRNSKGVRYSSHTTPSSSLGRGMQFRKLSSCYECHTAIDPRRFPSPRTTICACSQCGEIFPKPES LELHQRIRHAVSELGPEDSGRNIVEIIFKSSWMKRDSSICKIERILKVHNTQRTIQRFEDCRDAVKSRAVNSTRKNPRCAADGNELLRFYCTTLTCSLGA RGGSGICAAIPACGVCTAIRHGFQGKELRGVRTTASSGRAHDSLVVGCTGVEVRRAMLVCRVIAGRVKRVSAAGEDSQEDGGGYGGAYDSVAGCEGLYSN YLEELFVFNPKAILPCFVVIYKAVES

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G75710	C2H2ZnF		C2H2-like zinc finger protein ...		Lus10034522 [exp]	0	1
AT1G62400		HT1	high leaf temperature 1, Prote...		Lus10000237 [exp]	1.0	0.9293
AT4G32000			Protein kinase superfamily pro...		Lus10041026 [exp]	2.4	0.8919
AT5G07040			RING/U-box superfamily protein...		Lus10024124 [exp]	3.7	0.8432
AT1G74670		GASA6	GA-stimulated Arabidopsis 6, G...		Lus10008612 [exp]	4.2	0.8570
AT2G37640		ATHEXPALPHA1.9,...	ARABIDOPSIS THALIANA EXPANSIN ...		Lus10024388 [exp]	4.5	0.9077
AT1G51940			protein kinase family protein ...		Lus10006841 [exp]	5.3	0.8905
AT1G62400		HT1	high leaf temperature 1, Prote...		Lus10002374 [exp]	5.8	0.8420
AT1G28100			unknown protein		Lus10001800 [exp]	8.4	0.8123
AT1G53700		PK3AT, WAG1	PROTEIN KINASE 3 ARABIDOPSIS T...		Lus10005583 [exp]	8.7	0.8360
AT1G06930			unknown protein		Lus10009096 [exp]	10.5	0.8831

Compare expression of checked genes

Lus10034522 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.