Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033147 [exp] 92 / 8e-25 AT1G75717 41 / 8e-06 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G238400 [exp] 51 / 1e-08 AT1G75717 52 / 1e-09 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10034523 pacid=23162763 polypeptide=Lus10034523 locus=Lus10034523.g ID=Lus10034523.BGIv1.0 annot-version=v1.0 ATGCCTCGAAACCAGAGCCTCACTATACAAATACCAGACCTTATTACCAATGAAAGTGGCTACTGCACCACCAAGACCAATATCATTAGCGATACTTCTT TTCATCGGGAGCCACTAGACGACAAGTTTTGGGCTATGAAGTTGTTCAATCGCTTCCGTAAGGTTCTGGTGCGACTCTTATTCTCCAGTACTACACCTTC TAGTTATCGCGACGGCGGCGGAGGACGGAACCAAGGGCGGCGTCGTAGTGATGACCGGCATTCTTCGGCGGCGGACCCACCGAAGATATCGTGCAGCAGC AGCTCAGTGTATAATTACTCGGCTCAGTTGCATTACAGTGAGGCGGTTGCTGATTGCATTGAGTTCTTGAACAAGTCCAGCTCAGCCTCCTCCACGCCTG CTACTACTACTCACGACGTCGATGATGACGACTTCGTCAGATATTCCGGTTTCGATCAACATCGTCTGAACCAAATCGGTCATGTTTGGGTTTGA
AA sequence Show only first row Show all	>Lus10034523 pacid=23162763 polypeptide=Lus10034523 locus=Lus10034523.g ID=Lus10034523.BGIv1.0 annot-version=v1.0 MPRNQSLTIQIPDLITNESGYCTTKTNIISDTSFHREPLDDKFWAMKLFNRFRKVLVRLLFSSTTPSSYRDGGGGRNQGRRRSDDRHSSAADPPKISCSS SSVYNYSAQLHYSEAVADCIEFLNKSSSASSTPATTTHDVDDDDFVRYSGFDQHRLNQIGHVWV

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G75717			unknown protein		Lus10034523 [exp]	0	1
AT1G77860		KOM	KOMPEITO, Rhomboid-related int...		Lus10028036 [exp]	6.5	0.8354
AT5G09530		PRP10, PELPK1	proline-rich protein 10, Pro-G...		Lus10033898 [exp]	50.0	0.8016
AT2G43870			Pectin lyase-like superfamily ...		Lus10002126 [exp]	53.2	0.7921
					Lus10003030 [exp]	53.5	0.7381
AT2G17080			Arabidopsis protein of unknown...		Lus10023954 [exp]	72.4	0.7488
AT3G62100	AUX_IAA	IAA30	indole-3-acetic acid inducible...		Lus10038025 [exp]	74.8	0.7884
AT3G02230		ATRGP1, RGP1	ARABIDOPSIS THALIANA REVERSIBL...		Lus10022443 [exp]	76.8	0.7904
AT5G11590	AP2_ERF	DREB3, TINY2	TINY2, Integrase-type DNA-bind...		Lus10011123 [exp]	83.4	0.7861
AT3G09280			unknown protein		Lus10021099 [exp]	102.1	0.7585
AT5G19790	AP2_ERF	RAP2.11	related to AP2 11 (.1)		Lus10036793 [exp]	104.2	0.7305

Compare expression of checked genes

Lus10034523 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.