Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G34860 923 / 0 A/N-InvB alkaline/neutral invertase B, Plant neutral invertase family protein (.1.2) AT4G09510 859 / 0 A/N-InvI, CINV2 alkaline/neutral invertase I, cytosolic invertase 2 (.1.2) AT1G22650 844 / 0 A/N-InvD alkaline/neutral invertase D, Plant neutral invertase family protein (.1) AT1G35580 828 / 0 A/N-InvG, CINV1 alkaline/neutral invertase G, cytosolic invertase 1 (.1.2.3) AT1G72000 820 / 0 A/N-InvF alkaline/neutral invertase F, Plant neutral invertase family protein (.1) AT5G22510 603 / 0 INV-E, At-A/N-InvE Arabidopsis alkaline/neutral invertase E, alkaline/neutral invertase E, alkaline/neutral invertase (.1) AT1G56560 582 / 0 A/N-InvA alkaline/neutral invertase A, Plant neutral invertase family protein (.1) AT3G06500 569 / 0 A/N-InvC alkaline/neutral invertase C, Plant neutral invertase family protein (.1) AT3G05820 560 / 0 At-A/N-InvH Arabidopsis alkaline/neutral invertase H, alkaline/neutral invertase H, invertase H (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033144 [exp] 1110 / 0 AT4G34860 944 / 0.0 alkaline/neutral invertase B, Plant neutral invertase family protein (.1.2) Lus10042390 [exp] 915 / 0 AT4G34860 982 / 0.0 alkaline/neutral invertase B, Plant neutral invertase family protein (.1.2) Lus10026284 [exp] 912 / 0 AT4G34860 979 / 0.0 alkaline/neutral invertase B, Plant neutral invertase family protein (.1.2) Lus10014824 [exp] 878 / 0 AT4G09510 987 / 0.0 alkaline/neutral invertase I, cytosolic invertase 2 (.1.2) Lus10006078 [exp] 878 / 0 AT4G09510 1001 / 0.0 alkaline/neutral invertase I, cytosolic invertase 2 (.1.2) Lus10016938 [exp] 877 / 0 AT4G09510 985 / 0.0 alkaline/neutral invertase I, cytosolic invertase 2 (.1.2) Lus10009441 [exp] 712 / 0 AT4G09510 831 / 0.0 alkaline/neutral invertase I, cytosolic invertase 2 (.1.2) Lus10043375 [exp] 607 / 0 AT5G22510 918 / 0.0 Arabidopsis alkaline/neutral invertase E, alkaline/neutral invertase E, alkaline/neutral invertase (.1) Lus10019532 [exp] 606 / 0 AT5G22510 922 / 0.0 Arabidopsis alkaline/neutral invertase E, alkaline/neutral invertase E, alkaline/neutral invertase (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G167500 [exp] 920 / 0 AT4G34860 994 / 0.0 alkaline/neutral invertase B, Plant neutral invertase family protein (.1.2) Potri.005G239400 [exp] 911 / 0 AT4G34860 927 / 0.0 alkaline/neutral invertase B, Plant neutral invertase family protein (.1.2) Potri.009G129000 [exp] 902 / 0 AT4G34860 972 / 0.0 alkaline/neutral invertase B, Plant neutral invertase family protein (.1.2) Potri.019G082000 [exp] 871 / 0 AT4G09510 981 / 0.0 alkaline/neutral invertase I, cytosolic invertase 2 (.1.2) Potri.013G110800 [exp] 868 / 0 AT4G09510 992 / 0.0 alkaline/neutral invertase I, cytosolic invertase 2 (.1.2) Potri.002G173600 [exp] 728 / 0 AT4G09510 741 / 0.0 alkaline/neutral invertase I, cytosolic invertase 2 (.1.2) Potri.004G186500 [exp] 604 / 0 AT5G22510 913 / 0.0 Arabidopsis alkaline/neutral invertase E, alkaline/neutral invertase E, alkaline/neutral invertase (.1) Potri.008G101500 [exp] 602 / 0 AT3G06500 911 / 0.0 alkaline/neutral invertase C, Plant neutral invertase family protein (.1) Potri.008G024100 [exp] 599 / 0 AT5G22510 894 / 0.0 Arabidopsis alkaline/neutral invertase E, alkaline/neutral invertase E, alkaline/neutral invertase (.1) Potri.010G236100 [exp] 597 / 0 AT5G22510 897 / 0.0 Arabidopsis alkaline/neutral invertase E, alkaline/neutral invertase E, alkaline/neutral invertase (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description
Representative CDS sequence Show only first row Show all	>Lus10034525 pacid=23162697 polypeptide=Lus10034525 locus=Lus10034525.g ID=Lus10034525.BGIv1.0 annot-version=v1.0 ATGGCGCCGTTGGTGGATTTGTCTCAGAACGGAACTGCGGAATATTCTGACGATGATTCTGATGACATTCTCAAGTTGTTGGATACAACGAAGCCGATCA AGGTGGAAAGACCCAAGTCGTTTGGCGAAAGATCGTATAATGAACTGTCGGCGGCGGTGGCGGCGGCGACGGCTGTGTCGCCTCGTCACTACAGAAACTA CGAAGCCACCTCCCGAGTTGACCATATCGACTATGTCTATTCTCCTGGAAGATGGTCCGGTTTCAATTCTCCCAGGTCTAGCATCCACTTCGAATCCAAT CCAATCGTGGCCGAAGCCTGGGATTTGTTGCGCCGATCTTTAGTTCACTTCCGTGGCCAGCCCGTTGGAACCATCGCCGCTTTGGACCATTCCGATGAAA AACTCAACTACGATCAGGTGTTTGTTAGGGATTTTGTACCAAGTGGGTTGGCGTTCTTGATGAACGGGGAATACGACGTTGTGAAGAACTTTCTACTGAA GACGCTACACCTCCAATCGTGGGAGAAAACGGTGGATCATTTCCAGCTAGGAGAAGGAGTTATGCCTGCTAGCTTCAAGGTCCTACACAAACCTGAGAGG AACATCGAGACATTGATCGCCGACTTCGGGGAGACAGCAATCGGAAGAGTAGCGCCCGTTGATTCAGGGTTTTGGTGGATCATTCTACTCCGTGCTTATA CCAAATCAACAGGGGACTCTTCCCTCGCCGAAATGCCCAGCTGCCAGAGAGGAATGCGTCTCATCCTCTCCCTCTGTCTCTCCGAAGGATTCGACACTTT CCCAACTCTACTCTGCGCCGATGGTTGCTGCATGATCGACCGTAGAATGGGGGTGTATGGCTATCCAATTGAGATACAAGCACTGTTCTTCATGGCTCTG AGATGCGCGCTGACTCTGCTGAAGCAAGATTCGGAAGGGAAGGAGTTCGTCGAGCGGATTGTGAAGCGACTCCACGCTCTAAGCTACCATATGCGGAGCT ATTACTGGCTGGACCTGAAGCCACTTAACGACATCTACCGTTACAAGACGGAGGAGTACTCGCACACGGCGGTTAACAAGTTCAACGTCATGCCGGACTC ACTTCCGCACTGGGTTTTCGATTTCATGCCAACTCGAGGCGGCTACTTCATCGGGAACGTCAGCCCGGCGAAGATGGATTTCCGATGGTTCTGCCTGGGG AACTGCATCGCCATCTTGTCGTCGTTGGCCACGCCGGAGCAAGCTGCGGCCATTATGGATTTGATCGAAGCGCGTTGGGACGAGTTGGTAGGGGAGATGC CGTTGAAGGTATGTTATCCTGCGATTGAAGGGCATGAATGGCGGATTGTGACGGGTTGTGACCCGAAGAATACCCGGTGGAGCTACCACAATGGAGGGTC TTGGCCAGTGCTTTTGTGGATGCTGACGGCGGCGTGCATAAAGAGTGGGAGGCCGCAGATAGCAAGGAGGGCGTTGGAGGTGGCGGAGAGCCGATTGGGG AAGGACCACTGGCCAGAGTATTACGACGGGAAGCTAGGTCGATTCGTAGGGAAGCAAGCGAGGAAGAACCAAACATGGTCCATTGCTGGTTACTTGGTAG CCAAAATGATGCTGGAGGATCCTTCCCATTTGGGAATGGTGTCTTTGGAGGAAGACAAACTAATGAAGCCATTGATGAAGAGATCAACTTCTTGGACTTG TTAA
AA sequence Show only first row Show all	>Lus10034525 pacid=23162697 polypeptide=Lus10034525 locus=Lus10034525.g ID=Lus10034525.BGIv1.0 annot-version=v1.0 MAPLVDLSQNGTAEYSDDDSDDILKLLDTTKPIKVERPKSFGERSYNELSAAVAAATAVSPRHYRNYEATSRVDHIDYVYSPGRWSGFNSPRSSIHFESN PIVAEAWDLLRRSLVHFRGQPVGTIAALDHSDEKLNYDQVFVRDFVPSGLAFLMNGEYDVVKNFLLKTLHLQSWEKTVDHFQLGEGVMPASFKVLHKPER NIETLIADFGETAIGRVAPVDSGFWWIILLRAYTKSTGDSSLAEMPSCQRGMRLILSLCLSEGFDTFPTLLCADGCCMIDRRMGVYGYPIEIQALFFMAL RCALTLLKQDSEGKEFVERIVKRLHALSYHMRSYYWLDLKPLNDIYRYKTEEYSHTAVNKFNVMPDSLPHWVFDFMPTRGGYFIGNVSPAKMDFRWFCLG NCIAILSSLATPEQAAAIMDLIEARWDELVGEMPLKVCYPAIEGHEWRIVTGCDPKNTRWSYHNGGSWPVLLWMLTAACIKSGRPQIARRALEVAESRLG KDHWPEYYDGKLGRFVGKQARKNQTWSIAGYLVAKMMLEDPSHLGMVSLEEDKLMKPLMKRSTSWTC

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G34860		A/N-InvB	alkaline/neutral invertase B, ...		Lus10034525 [exp]	0	1
AT2G17760			Eukaryotic aspartyl protease f...		Lus10028411 [exp]	2.0	0.8830
AT1G20110			RING/FYVE/PHD zinc finger supe...		Lus10013571 [exp]	2.2	0.8917
AT3G52850		VSR1;1, GFS1, B...	VACUOLAR SORTING RECEPTOR 1;1,...		Lus10025136 [exp]	7.1	0.8613
AT4G21540		SPHK1	sphingosine kinase 1 (.1.2.3)		Lus10011246 [exp]	9.8	0.8612
AT1G16180			Serinc-domain containing serin...		Lus10008709 [exp]	13.0	0.8506
AT1G28420	HD	HB-1	homeobox-1 (.1)		Lus10015400 [exp]	14.5	0.8318
AT2G29050		ATRBL1	RHOMBOID-like 1 (.1.2)		Lus10023789 [exp]	16.1	0.8547
AT4G25150			HAD superfamily, subfamily III...		Lus10007939 [exp]	18.4	0.8400
AT5G53330			Ubiquitin-associated/translati...		Lus10038829 [exp]	20.6	0.8596
AT1G21450	GRAS	SCL1	SCARECROW-like 1 (.1)		Lus10042776 [exp]	35.9	0.8133

Compare expression of checked genes

Lus10034525 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.