Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G19980 102 / 5e-25 cytomatrix protein-related (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017215 [exp] 178 / 2e-53 AT1G19980 187 / 1e-56 cytomatrix protein-related (.1) Lus10021095 [exp] 168 / 1e-49 AT1G19980 195 / 3e-59 cytomatrix protein-related (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G239500 [exp] 147 / 9e-42 AT1G19980 246 / 4e-79 cytomatrix protein-related (.1) Potri.002G022200 [exp] 137 / 1e-37 AT1G19980 203 / 2e-62 cytomatrix protein-related (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10034526 pacid=23162813 polypeptide=Lus10034526 locus=Lus10034526.g ID=Lus10034526.BGIv1.0 annot-version=v1.0 ATGGGTACTGCTGACCCTTGCGATGCAGCTTCAGATCGGGCAAAAACGAATGCGATATTTGAGGGCTTGGTGAAACTGCTGAAGAATCAACAATGGCAGC TCCGAACTCTACTTTCCCAGCGGGGACTCCTCGAAGATCACATAAAGAAGCAGAACGAAACATGGGTCTCCAACTTACTTGCGTACCAACTTCATATCTC GGAGTTGAAGTCACGTCTTGAAGAGAAAGAGTTGGAAAGAGTTTCGCTGGCAGCCAAATCCGAGTTACTGGTGGAATTGAAGGCCAGAGAGGCTCTGGTT CATAAACTGAAACTAGAAGAAGCAAAAGAGGAATTGGCGGATTTCATAGCTTTGTTTAAATACGTCTCTGCTAGCTTGAAAGACTCTGATGATGGAAAGA AGAAGAGCGATACAAGGTCGTCTTCATCCGACGAGTTTAGTGAAGTCCAAAGGCTTGCCCTCGAGCACAAGAAGCTTTCTTCTCAAAAGAAGGCACTTTC GAGAGAGAAAAGGTTCATCTGGAATCAACTCAACATTTTACAGACCAATCTTACCAATAAGGTCAAGGACAAGCAAGCTGAAGCCGATCAATCACATGCA AAGCTCGCTCAAGTTATTGGCACAGCGGAACAACTTCAGTCTTGTAACGTTGACAAGGACGAGACCATTAAGGAGCTGAAGGCAAGAGTGTGTGACATGG AGGAAGAGGGCCAAATATGGAAAGATAAGGTTTCCAAGCTGTGGCAAGAGTTGGAAGGTTTGAAGAACAAGCCTACTGAAGTAAGCACTCCTGTGCTGAG AAGCTGCAATCACGAAAAGGGTCATAGCAGCAATACAGTGAAGAAATACTCAGCTGCTACGAACTTTATGAAAAAGTATCAATCTTGTTGA
AA sequence Show only first row Show all	>Lus10034526 pacid=23162813 polypeptide=Lus10034526 locus=Lus10034526.g ID=Lus10034526.BGIv1.0 annot-version=v1.0 MGTADPCDAASDRAKTNAIFEGLVKLLKNQQWQLRTLLSQRGLLEDHIKKQNETWVSNLLAYQLHISELKSRLEEKELERVSLAAKSELLVELKAREALV HKLKLEEAKEELADFIALFKYVSASLKDSDDGKKKSDTRSSSSDEFSEVQRLALEHKKLSSQKKALSREKRFIWNQLNILQTNLTNKVKDKQAEADQSHA KLAQVIGTAEQLQSCNVDKDETIKELKARVCDMEEEGQIWKDKVSKLWQELEGLKNKPTEVSTPVLRSCNHEKGHSSNTVKKYSAATNFMKKYQSC

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G19980			cytomatrix protein-related (.1...		Lus10034526 [exp]	0	1
AT2G37960			unknown protein		Lus10027749 [exp]	5.7	0.6758
AT5G55390		EDM2	ENHANCED DOWNY MILDEW 2 (.1.2)		Lus10038454 [exp]	16.5	0.6378
					Lus10019128 [exp]	18.0	0.6714
AT3G11570		TBL8	TRICHOME BIREFRINGENCE-LIKE 8 ...		Lus10017004 [exp]	24.0	0.6630
AT3G09890			Ankyrin repeat family protein ...		Lus10021508 [exp]	24.5	0.6565
AT2G13680		GLS2, ATGSL02, ...	ARABIDOPSIS THALIANA GLUCAN SY...		Lus10000830 [exp]	26.8	0.6679
AT2G40190		LEW3	LEAF WILTING 3, UDP-Glycosyltr...		Lus10008975 [exp]	27.5	0.6600
AT3G11570		TBL8	TRICHOME BIREFRINGENCE-LIKE 8 ...		Lus10021328 [exp]	34.9	0.6490
AT3G01410			Polynucleotidyl transferase, r...		Lus10032166 [exp]	35.8	0.6289
AT3G20430			unknown protein		Lus10024443 [exp]	36.8	0.6030

Compare expression of checked genes

Lus10034526 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.