Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G31940 37 / 0.0009 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006311 [exp] 44 / 6e-06 AT5G19875 83 / 3e-21 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G022100 [exp] 40 / 0.0001 ND / Potri.001G009200 [exp] 38 / 0.0005 AT5G19875 72 / 5e-17 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10034527 pacid=23162886 polypeptide=Lus10034527 locus=Lus10034527.g ID=Lus10034527.BGIv1.0 annot-version=v1.0 ATGAATTGGGTAGGAGGAGGAGGCTCATCGGCATCAACAACATACAAACAAGGCTGGAAAACTCAAACCCTGGCTTCACTATCCCTACCTCCCATCCCTT TGCTAACCCTTTTCTTCATCATCTTCTTCCTTCTCTTCCTCTCTTCTTATTCCACTGTCAAGAACAACATGAACCATACTTTTCTCAGCTTCAAGGTCAT CCTCCTTTTCCTCCCAGTCCTCCTAATCTTCCTTGCTCAGCTTCTCTCCAAGTTCGACACTTTTCCCTTTTTCCTACCCTCCAAGGCTGCCTATGGCCGC ACAAGAAGCCTCCGGAGGTTGGTCGACTTGCCCTGGGGGATGGTGGCCGTTGTTGTGTTCCTTCTTGTCATGATCTCTTTCCAGTCTTCTCTTCAGTCTA TGTGGTCTCCTCTAGTTCGCCGCTCGGATTAA
AA sequence Show only first row Show all	>Lus10034527 pacid=23162886 polypeptide=Lus10034527 locus=Lus10034527.g ID=Lus10034527.BGIv1.0 annot-version=v1.0 MNWVGGGGSSASTTYKQGWKTQTLASLSLPPIPLLTLFFIIFFLLFLSSYSTVKNNMNHTFLSFKVILLFLPVLLIFLAQLLSKFDTFPFFLPSKAAYGR TRSLRRLVDLPWGMVAVVVFLLVMISFQSSLQSMWSPLVRRSD

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G19875			unknown protein		Lus10034527 [exp]	0	1
AT2G15310		ATARFB1A	ADP-ribosylation factor B1A (....		Lus10002817 [exp]	3.9	0.9035
AT5G18970			AWPM-19-like family protein (....		Lus10001116 [exp]	4.6	0.9361
AT5G18970			AWPM-19-like family protein (....		Lus10021949 [exp]	6.0	0.9299
AT4G23410		TET5	tetraspanin5 (.1)		Lus10041411 [exp]	6.7	0.8962
AT4G25140		OLE1, OLEO1	oleosin 1 (.1)		Lus10022141 [exp]	7.7	0.9018
AT2G34140	DOF	AtDof2. 3	Dof-type zinc finger DNA-bindi...		Lus10001896 [exp]	8.0	0.8466
AT3G55740		ATPROT2, ProT2	proline transporter 2 (.1.2)		Lus10040238 [exp]	11.2	0.8872
AT1G23530			unknown protein		Lus10013015 [exp]	11.5	0.8985
AT1G76040		CPK29	calcium-dependent protein kina...		Lus10017251 [exp]	12.2	0.9010
AT1G05160		ATKAO1, CYP88A3	ENT-KAURENOIC ACID OXYDASE 1, ...		Lus10019513 [exp]	13.3	0.7899

Compare expression of checked genes

Lus10034527 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.