Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G04980 268 / 6e-89 ATPDI10, ATPDIL2-2 ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 10, PDI-like 2-2 (.1) AT2G32920 258 / 6e-85 ATPDI9, ATPDIL2-3 ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 9, PDI-like 2-3 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031522 [exp] 268 / 9e-89 AT1G04980 651 / 0.0 ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 10, PDI-like 2-2 (.1) Lus10015160 [exp] 263 / 6e-87 AT1G04980 621 / 0.0 ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 10, PDI-like 2-2 (.1) Lus10035360 [exp] 256 / 9e-84 AT1G04980 543 / 0.0 ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 10, PDI-like 2-2 (.1) Lus10029954 [exp] 196 / 2e-64 AT1G04980 157 / 9e-47 ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 10, PDI-like 2-2 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G160000 [exp] 282 / 1e-94 AT1G04980 617 / 0.0 ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 10, PDI-like 2-2 (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10034528 pacid=23162761 polypeptide=Lus10034528 locus=Lus10034528.g ID=Lus10034528.BGIv1.0 annot-version=v1.0 ATGAGCAGGTTCAATGTTCAAGGATTTCCAACCATCTTGGTATTCGGTACGGATAAAGACAGTCCAATGACATACGAGGGTGCCAGAACAGCCTCAGCTA TCGAGTCGTTCGCACTTGTACAGCTGGAAACAGATGTTGCTCCACTTGAAGTGACTGAGTTGACTAGCCCGGATGTCATGGAGGATAAGTGTGGTTCCGC TGCGATCTGTTTCGTATCGTTCCTGCAGAAGGAAGGAACAAGTACCTTGACCAATTACTATCATAATCCTCCTCTGCAGCTATGTGTGGGTTGCTGTTGG ACGCAACCAAACCTCGAAAAGAGCGTTGGTGTTGGTGGGTACGGGTATCCAGCTTTTGTAGCATTGAACGTGAAGAAAGGAGTCTTCGCTCCACTTAAAA GTGCCTACGAGCTCGAACACATCAGAGAGTTTGTGAAGGAAGCAGGGAGAGGTGGGAAGGGGAACCTGCCATTGGAAGGGACACTAGAGATAGTGAAGAT AGAGCCATGGGACGGTAAAGACGGACAAATCATGGAAGAAGATGAGTTCTCTCTCGAAGAGTTGATGGGCGACGAGGATCAGACCTCAACCAAAGACGAA TTGTGA
AA sequence Show only first row Show all	>Lus10034528 pacid=23162761 polypeptide=Lus10034528 locus=Lus10034528.g ID=Lus10034528.BGIv1.0 annot-version=v1.0 MSRFNVQGFPTILVFGTDKDSPMTYEGARTASAIESFALVQLETDVAPLEVTELTSPDVMEDKCGSAAICFVSFLQKEGTSTLTNYYHNPPLQLCVGCCW TQPNLEKSVGVGGYGYPAFVALNVKKGVFAPLKSAYELEHIREFVKEAGRGGKGNLPLEGTLEIVKIEPWDGKDGQIMEEDEFSLEELMGDEDQTSTKDE L

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G04980		ATPDI10, ATPDIL...	ARABIDOPSIS THALIANA PROTEIN D...		Lus10034528 [exp]	0	1
AT2G14260		PIP	proline iminopeptidase (.1.2)		Lus10035652 [exp]	5.5	0.8359
AT5G28740			Tetratricopeptide repeat (TPR)...		Lus10003866 [exp]	6.2	0.7829
AT1G69550			disease resistance protein (TI...		Lus10017420 [exp]	12.0	0.8390
AT1G30825		DIS2, ARPC2, AR...	DISTORTED TRICHOMES 2, ACTIN-R...		Lus10002867 [exp]	15.5	0.8021
AT3G11570		TBL8	TRICHOME BIREFRINGENCE-LIKE 8 ...		Lus10029430 [exp]	23.7	0.8353
					Lus10023006 [exp]	53.9	0.8083
AT3G54720		MFO1, HPT, COP2...	PRIMORDIA TIMING, Multifolia, ...		Lus10017223 [exp]	78.4	0.7806
AT3G25140		QUA1, GAUT8	QUASIMODO 1, GALACTURONOSYLTRA...		Lus10029734 [exp]	82.2	0.7568
AT1G65680		ATHEXPBETA1.4, ...	expansin B2 (.1)		Lus10027223 [exp]	92.9	0.7620
AT1G58370		ATXYN1, RXF12	ARABIDOPSIS THALIANA XYLANASE ...		Lus10013322 [exp]	101.2	0.7483

Compare expression of checked genes

Lus10034528 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.