Plant FIBer expression Database

Lus10034531 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues

No hit found

Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10033142
[exp]
392 / 4e-138 ND /
Poplar homologues

No hit found
PFAM info
Representative CDS sequence
>Lus10034531 pacid=23162829 polypeptide=Lus10034531 locus=Lus10034531.g ID=Lus10034531.BGIv1.0 annot-version=v1.0
ATGAAACAGGAGGAGGATAACAACTTGCTCCCTTCTTACTTCCAACAGCACGAGCTCGAAGTCGCCGCAATTCTCCTGGACGTCCCTCGTCTAATCGAAC
AATCCTCCCCCTTGTGCTGGTCTTCCAAGCGGAAGAGATCTTCTCGCTCTCGCGGCGACGGCGGAATCGATTCATTGCCCGTGCCGGCATTATCTCAACA
GGCCGCGTTGAATAGCTCCGTGGTCGTCAGAGATTATAACCCTAAGAAGACGAAGAAGGCGGTCAGCCCTACCACGCCGTTATCCTTGTCTCTCAGCGCT
GAAGAATCCGGCGACAAGCCGGCGGCTCCCCGCTCCAAACGGAGATCCCTTGCGAAAAGGTCGGTTGAGGATTGGGAGGAGAAGGTAGAGGAAAGCGAAG
AACAAGGGAGAGTTCTTCGGAATGAGATTGATAACGTGAAAGGCTATTACAATAATCTGGTAGAAGAGAATTCCAGACTGAAAGCCATTCAACTCCAGTT
GAGCCTTCGGGAGGAACAGAGAAGGCTTCGGTTAGTAGCGGAAACCCAATTGGCCGAATCGAGAAAAGAGTCAGCATTCATGGCTGTGAATGAGAAACAG
TTATTTGCCCCAGCCATGTGTTCATCTGGCTGCAGCTGTAGTGGTTATGATAATACTAATAATAATAGTAATAGTGGGGCTATTGATCTGAATAGTGAGA
GTAAGAGGGTTGATGTCTGTTTTCCGGTGGGCGAAAGAGGATGGAATGAGTCAATTTTTGGGGATTTTTTGCGGCGGCGTTACGATGATTGGGGGCTGAG
GATGGCGACGGCGGCTCAGGCGAGGAAGAGAAGGAGACATATGATGAAGGAGAAAGAGCAGCGCCGGCTAGGGGTTAATTCTATAGGGGTTATTCTAAGC
GTAGAAAAACTATACTAA
AA sequence
>Lus10034531 pacid=23162829 polypeptide=Lus10034531 locus=Lus10034531.g ID=Lus10034531.BGIv1.0 annot-version=v1.0
MKQEEDNNLLPSYFQQHELEVAAILLDVPRLIEQSSPLCWSSKRKRSSRSRGDGGIDSLPVPALSQQAALNSSVVVRDYNPKKTKKAVSPTTPLSLSLSA
EESGDKPAAPRSKRRSLAKRSVEDWEEKVEESEEQGRVLRNEIDNVKGYYNNLVEENSRLKAIQLQLSLREEQRRLRLVAETQLAESRKESAFMAVNEKQ
LFAPAMCSSGCSCSGYDNTNNNSNSGAIDLNSESKRVDVCFPVGERGWNESIFGDFLRRRYDDWGLRMATAAQARKRRRHMMKEKEQRRLGVNSIGVILS
VEKLY

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
Lus10034531
[exp]
0 1
AT4G21750 HD ATML1 MERISTEM LAYER 1, Homeobox-leu... Lus10020059
[exp]
7.1 0.8577
AT1G02065 SBP SPL8 squamosa promoter binding prot... Lus10028181
[exp]
13.6 0.8562
AT4G21750 HD ATML1 MERISTEM LAYER 1, Homeobox-leu... Lus10006765
[exp]
15.3 0.8496
AT4G33180 alpha/beta-Hydrolases superfam... Lus10038076
[exp]
16.2 0.8529
AT3G58070 C2H2ZnF GIS GLABROUS INFLORESCENCE STEMS, ... Lus10021081
[exp]
21.9 0.8226
AT1G73360 HD ATHDG11, HDG11,... ENHANCED DROUGHT TOLERANCE 1, ... Lus10031892
[exp]
22.1 0.8431
AT2G42840 PDF1 protodermal factor 1 (.1) Lus10031390
[exp]
22.6 0.8548
AT1G05230 HD HDG2 homeodomain GLABROUS 2 (.1.2.3... Lus10018360
[exp]
24.4 0.8417
AT3G05470 Actin-binding FH2 (formin homo... Lus10031496
[exp]
25.3 0.8419
AT3G05470 Actin-binding FH2 (formin homo... Lus10004505
[exp]
27.8 0.8455

Lus10034531 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.