Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G31870 381 / 6e-127 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033140 [exp] 724 / 0 AT1G31870 454 / 4e-153 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G087200 [exp] 440 / 4e-150 AT1G31870 418 / 1e-140 unknown protein Potri.001G147100 [exp] 111 / 2e-27 AT1G31870 111 / 2e-27 unknown protein
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF09736 [flax] [poplar] Bud13 Pre-mRNA-splicing factor of RES complex
Representative CDS sequence Show only first row Show all	>Lus10034532 pacid=23162882 polypeptide=Lus10034532 locus=Lus10034532.g ID=Lus10034532.BGIv1.0 annot-version=v1.0 ATGGAAACTGCATCTACATCAGTCTCTCTGAAGGAATACCTGAGAAAGCACTATGAAACTAATGATGAACAAGATAAAAAGAAAAAGAAGAAGAAGAGGA ACATTAAGCCAGTTGCAACAGGTGTCTCTGTTGTGGATGAAGATCCTGTGTGGCAAAAACCTATGAAATTTGAGGAAGAAGAAAATAATGAATCTCCAGA TGAAGAGCCTCAAGTTGATGAAGATATAGAAGTCAAGCGACTAAAGAGGCTTGAGCAACTCAGAGCTAAGCAATCCATTAATGCCATAGCTGAGGATGGG AGTGGTTGGGTATCACTTTCTCCAAAGCGTGCAGATCAGTTTGCCACAAGTTCTGATATGTCTCCACCACGTAAGAATAGTACCCGGAACGACACACCTT CTCCTGAACCTGAAAGAAGTAGAGAAAACAATAGGCGTTTTAGTTCTGATATATCACCCCCTCGTAAGAAGAGATCAGAAGATGATTCGCCTATGGTACA GCCAGGATTGTATCACTCTGTGGAAGATAAAGACTTCTCTCCTCCACGGAAGCGACATCAACATCATGATATTCATCCGATTGATAATCTCAGAAGAACC ATTCCTAGCTCTTGTACTATAAGCTCTGCCTTGTCTCCTCCTCGTAAGCAAAGAGCTCGATATGACACGCCTTCCCCAGATCCTGTTTTGAGGGATTCTA GGCAAGGTGCTGATCTTTCACCCCCAAGGAAAAGCAGGAAGGATGTGGTTACACCACGTTCTGGGGCTCCAACACGGTCATCAGCTAATGACAATTCGTT GAATGATGATCTGTCGCCCCCAAGAAAGAAAAGGGCTGGAGCATCTGATTCAGTTGGTGCGAAGGAACAACCATTAACTGGTCTAGTTAGTGGTCATGAT ATCAGCAATGAGATTTTGAGAAAAAAGAAAAACGATATGCTTCGGTTTGAAGAAATGGCTCCTGATGTAAGTGGGAAAGGTGCAGAGCCTGTTTATCGTG GCAAAAAAGGAGAGCGCATATCGAAGGAAGAGTACTTGAAATCAAAAGAAAAGAAAGAAGAAAAACCAAAGGAGAAGAAGATAGAATGGGGTAAAGGGTT GGCTCAAAAGCGTGAAGTGGAGGCTAAGGTGCGGGAATTAGAGGTTGAGAAGGAGAAGCCGTTTGCCAGGACGAGAGATGATCCTGAACTCGACACGATG CTTAAGGAGCGGCTTAGATGGGGTGATCCAATGGCACATTTGGTCAAGAAAAGAGGTACTGAACAAGTTCTTTCTGACCTGGGAGATGACGAAAAAATGA AGGAATCCGGGTTTATAATTCCCCAGGAAATCCCTAGTCACAGTTGGATAAAGAGAGGTTTACCTGCTGCGCCAAATAGATATGGTATAAAGCCTGGAAG ACATTGGGATGGTGTCGACCGAAGTAACGGATATGAGAAGCAGTTCTTCAAAAGAGCGAATGAGAAGCAAGCAACAGAACGTGAAGCTTATTTGTGGTCT GTATCCGATATGTAA
AA sequence Show only first row Show all	>Lus10034532 pacid=23162882 polypeptide=Lus10034532 locus=Lus10034532.g ID=Lus10034532.BGIv1.0 annot-version=v1.0 METASTSVSLKEYLRKHYETNDEQDKKKKKKKRNIKPVATGVSVVDEDPVWQKPMKFEEEENNESPDEEPQVDEDIEVKRLKRLEQLRAKQSINAIAEDG SGWVSLSPKRADQFATSSDMSPPRKNSTRNDTPSPEPERSRENNRRFSSDISPPRKKRSEDDSPMVQPGLYHSVEDKDFSPPRKRHQHHDIHPIDNLRRT IPSSCTISSALSPPRKQRARYDTPSPDPVLRDSRQGADLSPPRKSRKDVVTPRSGAPTRSSANDNSLNDDLSPPRKKRAGASDSVGAKEQPLTGLVSGHD ISNEILRKKKNDMLRFEEMAPDVSGKGAEPVYRGKKGERISKEEYLKSKEKKEEKPKEKKIEWGKGLAQKREVEAKVRELEVEKEKPFARTRDDPELDTM LKERLRWGDPMAHLVKKRGTEQVLSDLGDDEKMKESGFIIPQEIPSHSWIKRGLPAAPNRYGIKPGRHWDGVDRSNGYEKQFFKRANEKQATEREAYLWS VSDM

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G31870			unknown protein		Lus10034532 [exp]	0	1
AT5G58040		FIP1[V], ATFIP1...	homolog of yeast FIP1 [V], hom...		Lus10019609 [exp]	4.9	0.8806
AT1G17130			Family of unknown function (DU...		Lus10013707 [exp]	5.5	0.8678
AT5G16780		MDF, DOT2	MERISTEM-DEFECTIVE, DEFECTIVEL...		Lus10000285 [exp]	6.3	0.8838
AT1G32130		HNI9, ATIWS1	HIGH NITROGEN INSENSITIVE 9, A...		Lus10030992 [exp]	14.9	0.8882
AT1G32130		HNI9, ATIWS1	HIGH NITROGEN INSENSITIVE 9, A...		Lus10035391 [exp]	18.7	0.8813
AT3G14160			2-oxoglutarate-dependent dioxy...		Lus10033471 [exp]	19.0	0.8730
AT3G05210		UVR7, ERCC1	UV REPAIR DEFICIENT 7, nucleot...		Lus10004462 [exp]	20.5	0.8616
AT1G08710			F-box family protein (.1.2)		Lus10009519 [exp]	29.7	0.8636
AT4G14440		HCD1, ATECI3	DELTA\(3\), DELTA\(2\)-ENOYL C...		Lus10041154 [exp]	31.6	0.8693
AT1G17130			Family of unknown function (DU...		Lus10005575 [exp]	33.0	0.8690

Compare expression of checked genes

Lus10034532 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.