Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G42470 480 / 6e-170 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033139 [exp] 761 / 0 AT5G42470 490 / 3e-174 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G240000 [exp] 592 / 0 AT5G42470 504 / 8e-180 unknown protein Potri.002G021700 [exp] 577 / 0 AT5G42470 509 / 0.0 unknown protein
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF06113 [flax] [poplar] BRE Brain and reproductive organ-expressed protein (BRE)
Representative CDS sequence Show only first row Show all	>Lus10034533 pacid=23162903 polypeptide=Lus10034533 locus=Lus10034533.g ID=Lus10034533.BGIv1.0 annot-version=v1.0 ATGCCCTACGATGGTTTCCCGCCTTTAGTCTCCGCTCAACTTCAGTACCTTCTCAATCACTCCTCTCACCTGATCAAGGTAGACCAAGTTTGGTCCGGGA CCAAGTACTACCCTGGAGCTTATGATCGTTTCACTTTACTCATTCCCTACTGCCTAGACTACATCAAATGGGACGTGGTGTACAATGCTGAATTGCCTAT GGCTGCACCAGACATAATTTTTGCACGTGAAGATGAAGATTTCCATCCGTTTCACCAGGCCCGTGACAAAGAAGGGGGAGGAAAGCTTCTTGAGAGTAGT TTATGCAAATGGAACTTCAAAGACCCTACGGGCCTGTTCAATTTAATTGAGGAGTTGAGGAACAAGTATGTCTTGTACCAAACAAATCGTGTTGAACGAG TTGACGATGAGCGATTGAAGTTTGAGATTAGCACCATTATATCTAGGGAGGGAATTGAAATGCACATGAGTTCTGGTTTTGACAAGCCAGAGGAGGTGAA ATTTGCTGTGCCTTTATTGGACATGAACATAAACAAAATGGTACTTGCATGTCCTTGGAGACACCAACAGAAGATATACTTGCAGGTTGTATATCCAGTA GGGAGAAAGTATGTGTCTACCCCTGCAGCACCTCGTCTAAAATTAACGAGTACTGCAGAGTTGAAGGCTCTATTTTCCGTTGATGATATCAAACTTCCTT CTTGGGTTGATGCAATGTGTTTAGCTGAATATCTACCCCATATAGAGGAACTTCTACAGAGACAGGTCTTAGAGGCAGTTTCTCTGATTGATGTCAGGAG GCATTTTATTGAGGCATTGGCGCCCCTGTTTGGCAGGCCACTAGAAGCTGACCCTGTGTTCTGCAGAAAGGCCACTTTTCTTGCCTCCTCTGGACCATTT ACATTCCTGGTGCATGTTTTTATATCAACTCAGTTCCCTAAACAAACTCCCGCTTTGATGCTTCAAAGTACTCAGTTGAGAGAGCTCTGTATCTCTCCTG GTCTTCTTATGCCTGATGATCACGTTCAAAATGCTTCTGAGCATTTTAATTCTAGAGGGATGCCAGTGAAGTCAGCTCTTCTGGCAGAATATCCATGGAG CCCTAGATGGGAAGTGTCACTAATGGCAGAGAAAATCCACGAATTCTTGGTGGATGAGTGCCTGAGCTTCAAGAGGCACTGCAACGAATCTCAAGTTCAA CAGTAA
AA sequence Show only first row Show all	>Lus10034533 pacid=23162903 polypeptide=Lus10034533 locus=Lus10034533.g ID=Lus10034533.BGIv1.0 annot-version=v1.0 MPYDGFPPLVSAQLQYLLNHSSHLIKVDQVWSGTKYYPGAYDRFTLLIPYCLDYIKWDVVYNAELPMAAPDIIFAREDEDFHPFHQARDKEGGGKLLESS LCKWNFKDPTGLFNLIEELRNKYVLYQTNRVERVDDERLKFEISTIISREGIEMHMSSGFDKPEEVKFAVPLLDMNINKMVLACPWRHQQKIYLQVVYPV GRKYVSTPAAPRLKLTSTAELKALFSVDDIKLPSWVDAMCLAEYLPHIEELLQRQVLEAVSLIDVRRHFIEALAPLFGRPLEADPVFCRKATFLASSGPF TFLVHVFISTQFPKQTPALMLQSTQLRELCISPGLLMPDDHVQNASEHFNSRGMPVKSALLAEYPWSPRWEVSLMAEKIHEFLVDECLSFKRHCNESQVQ Q

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G42470			unknown protein		Lus10034533 [exp]	0	1
AT1G22275		ZYP1b	Myosin heavy chain-related pro...		Lus10010242 [exp]	4.5	0.7609
					Lus10035412 [exp]	7.9	0.8135
AT4G33620			Cysteine proteinases superfami...		Lus10020445 [exp]	9.9	0.8042
					Lus10008068 [exp]	10.4	0.7578
AT1G31300			TRAM, LAG1 and CLN8 (TLC) lipi...		Lus10038335 [exp]	11.1	0.7181
AT3G52820		ATPAP22, PAP22	purple acid phosphatase 22 (.1...		Lus10021378 [exp]	13.3	0.7595
AT3G58130			N-acetylglucosaminylphosphatid...		Lus10034805 [exp]	13.8	0.7808
AT1G60890			Phosphatidylinositol-4-phospha...		Lus10015456 [exp]	15.3	0.7966
AT4G22590		TPPG	trehalose-6-phosphate phosphat...		Lus10024607 [exp]	15.3	0.7643
AT2G26600			Glycosyl hydrolase superfamily...		Lus10006659 [exp]	15.7	0.7652

Compare expression of checked genes

Lus10034533 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.