Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G75800 376 / 4e-131 Pathogenesis-related thaumatin superfamily protein (.1) AT1G20030 352 / 6e-122 Pathogenesis-related thaumatin superfamily protein (.1.2) AT4G38670 323 / 4e-111 Pathogenesis-related thaumatin superfamily protein (.1.2.3) AT4G36010 315 / 2e-107 Pathogenesis-related thaumatin superfamily protein (.1.2) AT2G17860 298 / 1e-101 Pathogenesis-related thaumatin superfamily protein (.1) AT5G38280 297 / 7e-96 PR5K PR5-like receptor kinase (.1) AT4G38660 272 / 8e-90 Pathogenesis-related thaumatin superfamily protein (.1.2) AT4G24180 268 / 2e-89 ATTLP1 THAUMATIN-LIKE PROTEIN 1 (.1) AT1G19320 251 / 8e-83 Pathogenesis-related thaumatin superfamily protein (.1) AT1G75040 246 / 5e-81 PR-5, PR5 pathogenesis-related gene 5 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033136 [exp] 583 / 0 AT1G75800 375 / 8e-131 Pathogenesis-related thaumatin superfamily protein (.1) Lus10017265 [exp] 478 / 5e-171 AT1G75800 390 / 2e-136 Pathogenesis-related thaumatin superfamily protein (.1) Lus10041901 [exp] 311 / 6e-106 AT4G36010 329 / 2e-113 Pathogenesis-related thaumatin superfamily protein (.1.2) Lus10028448 [exp] 311 / 7e-106 AT4G36010 332 / 9e-115 Pathogenesis-related thaumatin superfamily protein (.1.2) Lus10013561 [exp] 288 / 3e-96 AT4G38660 326 / 2e-112 Pathogenesis-related thaumatin superfamily protein (.1.2) Lus10017266 [exp] 285 / 3e-95 AT4G24180 322 / 7e-111 THAUMATIN-LIKE PROTEIN 1 (.1) Lus10036435 [exp] 288 / 8e-91 AT4G38670 417 / 7e-139 Pathogenesis-related thaumatin superfamily protein (.1.2.3) Lus10023897 [exp] 271 / 9e-91 AT1G75800 271 / 8e-91 Pathogenesis-related thaumatin superfamily protein (.1) Lus10041899 [exp] 263 / 3e-86 AT4G38660 363 / 2e-125 Pathogenesis-related thaumatin superfamily protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G020500 [exp] 412 / 2e-145 AT1G75800 404 / 7e-142 Pathogenesis-related thaumatin superfamily protein (.1) Potri.005G240900 [exp] 409 / 5e-144 AT1G75800 398 / 7e-140 Pathogenesis-related thaumatin superfamily protein (.1) Potri.005G112700 [exp] 340 / 2e-117 AT4G36010 372 / 3e-130 Pathogenesis-related thaumatin superfamily protein (.1.2) Potri.009G132200 [exp] 306 / 1e-103 AT4G38670 410 / 2e-145 Pathogenesis-related thaumatin superfamily protein (.1.2.3) Potri.004G014574 [exp] 295 / 7e-100 AT1G75800 294 / 8e-100 Pathogenesis-related thaumatin superfamily protein (.1) Potri.005G241000 [exp] 290 / 6e-97 AT4G24180 348 / 5e-121 THAUMATIN-LIKE PROTEIN 1 (.1) Potri.001G221400 [exp] 283 / 1e-95 AT1G75800 260 / 1e-86 Pathogenesis-related thaumatin superfamily protein (.1) Potri.001G222100 [exp] 283 / 1e-95 AT1G75800 283 / 2e-95 Pathogenesis-related thaumatin superfamily protein (.1) Potri.001G221100 [exp] 279 / 4e-94 AT1G75800 277 / 2e-93 Pathogenesis-related thaumatin superfamily protein (.1) Potri.001G221900 [exp] 279 / 5e-94 AT1G75800 271 / 5e-91 Pathogenesis-related thaumatin superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0293 [flax] [poplar] CDC PF00314 [flax] [poplar] Thaumatin Thaumatin family
Representative CDS sequence Show only first row Show all	>Lus10034534 pacid=23162701 polypeptide=Lus10034534 locus=Lus10034534.g ID=Lus10034534.BGIv1.0 annot-version=v1.0 ATGACTCAACTGATTCTCCGATTTCTAATCCTTTCCCTAATTGCAGCTTATTTCGGTGTATCCGTCCTTTCAACCACTTTCACCATCACAAACGAATGCG ATCACACTGTATGGCCGGGGATCCTCTCAAGCGCCGACGCGCCTCCCCTCGCCACCACGGGCTTCCCGCTTCAGAAAGGTGAAACCCGGTCTATATCCGC CCCGGCTTCATGGGGTGGCCGCATGTGGGGCCGGACTCACTGCTCCGAGGACTCCACCACCGGTAAATTCTCCTGTCTCACCGGTGATTGTGGCTCCGGA AAGATGGAATGTTCCGGCAGCGGTGCGATTCCTCCGGCGACCCTGGTGGAATTCAAACTCGACGGCTACGATGGGCAGGATTTCTATGACGTCAGCCTCG TCGACGGCTATAACCTCCCGGTCCTAGTCTCTCCGCAGGGAGGCTCCGGCCAGAACTGTTCCAACACAGGGTGCGTGGTGGATCTGAACGGCGCGTGCCC TTCCGATATGAAGGTAACGACATCCGCCGGCGAGGGCGTGGCTTGCAAGAGCGCGTGTGAGGCTTTCCGTCAGCCACAGTACTGCTGTAACGGAGCTTAC TCGACGCCGGACACTTGTCCCCCGACTTCATACTCTCTGGCTTTCAAGAATAAGTGCCCACGCGCTTACAGCTACGCGTACGATGACAAAACTAGCACCT TCACCTGTACTTCCGCCCATTCCTACGCCATCACCTTCTGCCCAACTCCCAGCACCAGCCAAAAGGCGTCACAGGATCAGAGCCCGGCACAGAACCCGAA GACGGGAGGAGGAGACGAGGGGAAGAACGTTGGAGAGCCGTTTAGTAACGGCACAATGGTGTACGAAGGAGGCGAATTGTTGTCGAGCCATGGTACCCAC TTGGAGACAGCTGTCAGCATCACACTGGCCATCTGCCTGCTGTTGATGATGCACTTCTTCTGA
AA sequence Show only first row Show all	>Lus10034534 pacid=23162701 polypeptide=Lus10034534 locus=Lus10034534.g ID=Lus10034534.BGIv1.0 annot-version=v1.0 MTQLILRFLILSLIAAYFGVSVLSTTFTITNECDHTVWPGILSSADAPPLATTGFPLQKGETRSISAPASWGGRMWGRTHCSEDSTTGKFSCLTGDCGSG KMECSGSGAIPPATLVEFKLDGYDGQDFYDVSLVDGYNLPVLVSPQGGSGQNCSNTGCVVDLNGACPSDMKVTTSAGEGVACKSACEAFRQPQYCCNGAY STPDTCPPTSYSLAFKNKCPRAYSYAYDDKTSTFTCTSAHSYAITFCPTPSTSQKASQDQSPAQNPKTGGGDEGKNVGEPFSNGTMVYEGGELLSSHGTH LETAVSITLAICLLLMMHFF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G75800			Pathogenesis-related thaumatin...		Lus10034534 [exp]	0	1
AT2G42520			P-loop containing nucleoside t...		Lus10015976 [exp]	2.6	0.8883
AT3G54320	AP2_ERF	ATWRI1, ASML1, ...	WRINKLED 1, WRINKLED, ACTIVATO...		Lus10028880 [exp]	5.3	0.8608
AT2G43040		NPG1	no pollen germination 1, tetra...		Lus10029803 [exp]	22.4	0.8659
AT2G47470		ATPDI11, ATPDIL...	UNFERTILIZED EMBRYO SAC 5, MAT...		Lus10010274 [exp]	24.9	0.8633
AT3G07960		PIP5K6	phosphatidylinositol-4-phospha...		Lus10002734 [exp]	25.8	0.8224
AT1G06930			unknown protein		Lus10025251 [exp]	29.3	0.8301
AT4G27760		FEY3, FEY	FOREVER YOUNG, NAD(P)-binding ...		Lus10028534 [exp]	35.6	0.8566
AT5G20080			FAD/NAD(P)-binding oxidoreduct...		Lus10030059 [exp]	54.4	0.8479
AT1G75030		ATLP-3	thaumatin-like protein 3 (.1)		Lus10032726 [exp]	57.5	0.8535
AT4G10960		UGE5	UDP-D-glucose/UDP-D-galactose ...		Lus10023074 [exp]	62.7	0.8448

Compare expression of checked genes

Lus10034534 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.