Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G24190 1121 / 0 AtHsp90-7, HSP90.7, SHD SHEPHERD, HEAT SHOCK PROTEIN 90-7, Chaperone protein htpG family protein (.1.2) AT5G52640 599 / 0 AtHsp90-1, ATHS83, ATHSP90.1, HSP83, HSP81-1 HEAT SHOCK PROTEIN 83, HEAT SHOCK PROTEIN 81-1, HEAT SHOCK PROTEIN 90-1, heat shock protein 90.1 (.1) AT5G56000 585 / 0 Hsp81.4, AtHsp90.4 HEAT SHOCK PROTEIN 90.4, HEAT SHOCK PROTEIN 81.4 (.1) AT5G56030 582 / 0 AtHsp90.2, HSP90.2, ERD8, HSP81-2 HEAT SHOCK PROTEIN 90.2, EARLY-RESPONSIVE TO DEHYDRATION 8, HEAT SHOCK PROTEIN 90.2, heat shock protein 81-2 (.1.2) AT5G56010 581 / 0 AtHsp90-3, HSP81-3 HEAT SHOCK PROTEIN 90-3, heat shock protein 81-3 (.1) AT2G04030 531 / 4e-178 Hsp88.1, AtHsp90.5, HSP90.5, CR88, EMB1956 HEAT SHOCK PROTEIN 88.1, EMBRYO DEFECTIVE 1956, HEAT SHOCK PROTEIN 90.5, Chaperone protein htpG family protein (.1.2) AT3G07770 528 / 2e-176 Hsp89.1, AtHsp90-6 HEAT SHOCK PROTEIN 90-6, HEAT SHOCK PROTEIN 89.1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033135 [exp] 1379 / 0 AT4G24190 1224 / 0.0 SHEPHERD, HEAT SHOCK PROTEIN 90-7, Chaperone protein htpG family protein (.1.2) Lus10027303 [exp] 612 / 0 AT5G52640 1204 / 0.0 HEAT SHOCK PROTEIN 83, HEAT SHOCK PROTEIN 81-1, HEAT SHOCK PROTEIN 90-1, heat shock protein 90.1 (.1) Lus10039008 [exp] 605 / 0 AT5G52640 1204 / 0.0 HEAT SHOCK PROTEIN 83, HEAT SHOCK PROTEIN 81-1, HEAT SHOCK PROTEIN 90-1, heat shock protein 90.1 (.1) Lus10027517 [exp] 604 / 0 AT5G52640 1230 / 0.0 HEAT SHOCK PROTEIN 83, HEAT SHOCK PROTEIN 81-1, HEAT SHOCK PROTEIN 90-1, heat shock protein 90.1 (.1) Lus10039281 [exp] 601 / 0 AT5G52640 1226 / 0.0 HEAT SHOCK PROTEIN 83, HEAT SHOCK PROTEIN 81-1, HEAT SHOCK PROTEIN 90-1, heat shock protein 90.1 (.1) Lus10038845 [exp] 590 / 0 AT5G52640 1175 / 0.0 HEAT SHOCK PROTEIN 83, HEAT SHOCK PROTEIN 81-1, HEAT SHOCK PROTEIN 90-1, heat shock protein 90.1 (.1) Lus10014964 [exp] 588 / 0 AT5G52640 1177 / 0.0 HEAT SHOCK PROTEIN 83, HEAT SHOCK PROTEIN 81-1, HEAT SHOCK PROTEIN 90-1, heat shock protein 90.1 (.1) Lus10036843 [exp] 520 / 1e-173 AT2G04030 1278 / 0.0 HEAT SHOCK PROTEIN 88.1, EMBRYO DEFECTIVE 1956, HEAT SHOCK PROTEIN 90.5, Chaperone protein htpG family protein (.1.2) Lus10019206 [exp] 520 / 1e-173 AT2G04030 1283 / 0.0 HEAT SHOCK PROTEIN 88.1, EMBRYO DEFECTIVE 1956, HEAT SHOCK PROTEIN 90.5, Chaperone protein htpG family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G241100 [exp] 1181 / 0 AT4G24190 1227 / 0.0 SHEPHERD, HEAT SHOCK PROTEIN 90-7, Chaperone protein htpG family protein (.1.2) Potri.017G146600 [exp] 593 / 0 AT5G52640 1174 / 0.0 HEAT SHOCK PROTEIN 83, HEAT SHOCK PROTEIN 81-1, HEAT SHOCK PROTEIN 90-1, heat shock protein 90.1 (.1) Potri.001G466000 [exp] 590 / 0 AT5G56000 1132 / 0.0 HEAT SHOCK PROTEIN 90.4, HEAT SHOCK PROTEIN 81.4 (.1) Potri.016G003400 [exp] 578 / 0 AT5G56000 1148 / 0.0 HEAT SHOCK PROTEIN 90.4, HEAT SHOCK PROTEIN 81.4 (.1) Potri.001G286700 [exp] 577 / 0 AT5G56000 1118 / 0.0 HEAT SHOCK PROTEIN 90.4, HEAT SHOCK PROTEIN 81.4 (.1) Potri.006G002800 [exp] 574 / 0 AT5G56000 1115 / 0.0 HEAT SHOCK PROTEIN 90.4, HEAT SHOCK PROTEIN 81.4 (.1) Potri.004G073600 [exp] 534 / 0 AT5G52640 1021 / 0.0 HEAT SHOCK PROTEIN 83, HEAT SHOCK PROTEIN 81-1, HEAT SHOCK PROTEIN 90-1, heat shock protein 90.1 (.1) Potri.010G136800 [exp] 528 / 1e-176 AT2G04030 1232 / 0.0 HEAT SHOCK PROTEIN 88.1, EMBRYO DEFECTIVE 1956, HEAT SHOCK PROTEIN 90.5, Chaperone protein htpG family protein (.1.2) Potri.008G112700 [exp] 523 / 8e-175 AT2G04030 1201 / 0.0 HEAT SHOCK PROTEIN 88.1, EMBRYO DEFECTIVE 1956, HEAT SHOCK PROTEIN 90.5, Chaperone protein htpG family protein (.1.2) Potri.014G164900 [exp] 523 / 1e-174 AT3G07770 1182 / 0.0 HEAT SHOCK PROTEIN 90-6, HEAT SHOCK PROTEIN 89.1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0025 [flax] [poplar] His_Kinase_A PF02518 [flax] [poplar] HATPase_c Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CL0025 [flax] [poplar] PF00183 [flax] [poplar] HSP90 Hsp90 protein
Representative CDS sequence Show only first row Show all	>Lus10034535 pacid=23162848 polypeptide=Lus10034535 locus=Lus10034535.g ID=Lus10034535.BGIv1.0 annot-version=v1.0 ATGACGAGGAAGTGGACAGTCCCTTCCGCCTTGATTCTGCTCTGCCTTTTCTGCATAATCTCAGATCAAGGACGAAACTTCCAAGCGAATGCCGAAGGTG AATCTCAGAGTCCGGCGGATCCTCCTAAGGTTGAGGAGAAGCTGAGCGCCGTACCACATGGTTCCACTACGGATTCCGACGTTGTGAAGAGGGAGTCGGA GTCGATGAAGAAAACGCTCCGTAGTAGTGCGGAGAAGTTCGAGTTCCAGGCTGAGGTTTCTCGGCTTATGGACATTCTTATCAACTCTCTCTATAGCAAC AAAGATATATTCCTCAGGGAGTTGATCTCCAATGCATCTGATGCATTGGACAAGATTAGATTCCTTTCCCTTACAGAGAAAGAAGTATTGGGTGAAGGAG ATACCGCCAAGCTTGAGATTCAGATCAAGTTGGACAAGGACAAGAAAATCCTCTCTATTCGTGATAGAGGTATAGGTATGACGAAGGAGGATTTGATCAA GAACCTTGGAACAATAGCCAAGTCTGGAACTTCAGCTTTTGTGGAGAAAATGCAAACTAGCGGGGACCTCAATCTAATTGGACAGTTTGGGGTTGGTTTC TACTCCGTGTATCTAGTTGCTGACTATGTCGAAGTCATCAGCAAACATAATGAAGACAAACAGTATGTATGGGAGTCGAAGGCTGATGGAGCTTTTGCCA TCTCTGAGGATACATGGAATGACCCTTTGGGACGTGGTACTGAGATTAGATTGCATCTCAGAGAGGAAGCAGGGGAATACTTGGAAGAGAGCAAATTGAA AGATCTTGTGAAGAGATACTCTGAGTTTATCAACTTCCCTATCAACTTGTGGGCAACTAAGGAGATGGACGTGGAGGGTCCTGCTGACGAGGATGATTCA AGCGAAGAAGAAGACAAACCCGAAGACGAGGAAACCGAGAAGGGTGATGATGAAGAGACAGAAGATAAACCGAAGACAAAGACTGTCAAGGAAACTACGC AAGAGTGGGAACTCTTGAACGATGTTAAGGCTATTTGGTTGAGGAGTCCAAAAGATGTCACAGAAGAAGAGTACACGAAATTTTATCACTCTCTTGCCAA GGATTTTGGTGAAGAGAAGCCTATGTCATGGAGTCATTTCACTGCCGAAGGTGATGTGGAGTTCAAAGCTGTTCTCTTTGTGCCCCCTAAAGCTCCTCAT GATCTTTATGAGAGTTACTACAACAGTAACAAGTCCAACCTGAAGTTGTATGTCAGACGCGTGTTCATCTCAGATGAATTTGACGAACTTCTACCAAAGT ATTTGAACTTCTTGAAGGGTCTAGTTGATTCCGACACTCTACCCCTCAATGTTTCACGAGAAATGCTTCAACAACATAGCAGCTTGAAAACAATCAAGAA GAAGCTTATCCGTAAGGCACTTGATATGATCCGTAAGCTTTATGAGGAAGATCCCGATGAGTCAACTGACAAAGACAAGAAAGATGTTGAGGAATCCAGT GATAATGAAAAGAAAGGTCAGTACACAAGGTTCTGGAATGAGTATGGTAAATCCATCAAGCTTGGCATTATTGAAGACGCAGCTAACAGAAATCGCTTGG CGAAGCTTCTTCGATTCGAAAGCTCCAAGTCGGATGGAAAGTTAACTTCTCTTGATCAGTACATCTCAAGAATGAAATCAGGACAGAAGGACATCTTCTA CATAACAGGATCTGACAAGGCACAACTTGAGAAGTCTCCGTTCCTCGAGAGGCTTATCAAGAAGGGCTACGAGGTCATTTACTTCACAGATGCAGTAGAT GAATACTTGATGCAATATTTGATGGATTACGAGGACAAGAAGTTCCAGAACGTATCAAAGGAAGGAGTGAAGATCGCAGACTCACCAAACAAAGAAGTGA AGGAAACATTCAAGGATCTGACGAAGTGGTGGAAGGGAGCACTTGCAAGCTGGAATGTAGACGACGTGAAGGTCAGCAACCGTTTAGCTGACACACCTTG TGTAGTGGTGACAAACAAGTACGGATGGAGTGGGAATATGGAGAGGATAATGCACTCTCAGACTCTAACAGACGCTAGCAAGCAAGCCTACATGAGGGGA AAGAGGGTCCTGGAGATCAACCCTCGTCACCCCATTGTCAAAGAGCTACGCGAAAGAGTGGCCAAGGATGCCGAGGACGAGAGTGTGAAGGCAACAGCAC AGCTGATGTACCAAACTGCACTGATGGAGAGTGGATTCATGCTCAGCGATCCCCAGGATTTTGCTTCGCGAATCTACAGCTCAGTGAAGTCGAGTCTGAG CATAAGCCCAGATGCAACTGTTGAAGAGGAAGAAGAGATGGTGGAAGAAGAGAGTGAAAGTGAGAGTAAGGAGACTTCCGGAACCTCCAAGGATGATGCT GAGACATTCGAGGCCAAGGATGAGTTGTAA
AA sequence Show only first row Show all	>Lus10034535 pacid=23162848 polypeptide=Lus10034535 locus=Lus10034535.g ID=Lus10034535.BGIv1.0 annot-version=v1.0 MTRKWTVPSALILLCLFCIISDQGRNFQANAEGESQSPADPPKVEEKLSAVPHGSTTDSDVVKRESESMKKTLRSSAEKFEFQAEVSRLMDILINSLYSN KDIFLRELISNASDALDKIRFLSLTEKEVLGEGDTAKLEIQIKLDKDKKILSIRDRGIGMTKEDLIKNLGTIAKSGTSAFVEKMQTSGDLNLIGQFGVGF YSVYLVADYVEVISKHNEDKQYVWESKADGAFAISEDTWNDPLGRGTEIRLHLREEAGEYLEESKLKDLVKRYSEFINFPINLWATKEMDVEGPADEDDS SEEEDKPEDEETEKGDDEETEDKPKTKTVKETTQEWELLNDVKAIWLRSPKDVTEEEYTKFYHSLAKDFGEEKPMSWSHFTAEGDVEFKAVLFVPPKAPH DLYESYYNSNKSNLKLYVRRVFISDEFDELLPKYLNFLKGLVDSDTLPLNVSREMLQQHSSLKTIKKKLIRKALDMIRKLYEEDPDESTDKDKKDVEESS DNEKKGQYTRFWNEYGKSIKLGIIEDAANRNRLAKLLRFESSKSDGKLTSLDQYISRMKSGQKDIFYITGSDKAQLEKSPFLERLIKKGYEVIYFTDAVD EYLMQYLMDYEDKKFQNVSKEGVKIADSPNKEVKETFKDLTKWWKGALASWNVDDVKVSNRLADTPCVVVTNKYGWSGNMERIMHSQTLTDASKQAYMRG KRVLEINPRHPIVKELRERVAKDAEDESVKATAQLMYQTALMESGFMLSDPQDFASRIYSSVKSSLSISPDATVEEEEEMVEEESESESKETSGTSKDDA ETFEAKDEL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G24190		AtHsp90-7, HSP9...	SHEPHERD, HEAT SHOCK PROTEIN 9...		Lus10034535 [exp]	0	1
AT1G64550		SCORD5, AtGCN20...	susceptible to coronatine-defi...		Lus10023043 [exp]	2.0	0.8534
AT4G16660			heat shock protein 70 (Hsp 70)...		Lus10039014 [exp]	2.4	0.8185
AT4G16660			heat shock protein 70 (Hsp 70)...		Lus10027310 [exp]	3.2	0.8502
AT3G62600		ATERDJ3B	DNAJ heat shock family protein...		Lus10022297 [exp]	5.3	0.6994
AT5G03160		ATP58IPK	homolog of mamallian P58IPK (....		Lus10019928 [exp]	10.5	0.7124
AT5G61790		CNX1, ATCNX1	calnexin 1 (.1)		Lus10043021 [exp]	20.1	0.7905
AT3G62600		ATERDJ3B	DNAJ heat shock family protein...		Lus10003651 [exp]	23.2	0.7111
AT1G04980		ATPDI10, ATPDIL...	ARABIDOPSIS THALIANA PROTEIN D...		Lus10031522 [exp]	29.7	0.7450
AT1G22450		ATCOX6B2, COX6B	CYTOCHROME C OXIDASE 6B2, cyto...		Lus10020941 [exp]	38.6	0.6031
AT5G60920		COB	COBRA-like extracellular glyco...		Lus10021144 [exp]	38.7	0.6903

Compare expression of checked genes

Lus10034535 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.