Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G20060 192 / 7e-52 ATP binding microtubule motor family protein (.1) AT1G55550 87 / 2e-17 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT5G27550 76 / 6e-14 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT2G21380 75 / 1e-13 Kinesin motor family protein (.1) AT3G10180 73 / 3e-13 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT3G12020 72 / 8e-13 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) AT1G18410 72 / 1e-12 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT1G21730 71 / 1e-12 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT4G39050 71 / 1e-12 Kinesin motor family protein (.1) AT5G27950 71 / 1e-12 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033133 [exp] 572 / 0 AT1G20060 380 / 5e-116 ATP binding microtubule motor family protein (.1) Lus10033849 [exp] 83 / 2e-16 AT5G27950 662 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10011579 [exp] 77 / 2e-14 AT3G49650 950 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10012103 [exp] 77 / 4e-14 AT3G10180 1271 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10019245 [exp] 74 / 2e-13 AT3G49650 816 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10010441 [exp] 74 / 2e-13 AT3G10180 1214 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10021340 [exp] 73 / 4e-13 AT2G36200 1499 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Lus10018145 [exp] 73 / 4e-13 AT1G21730 1033 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10017016 [exp] 72 / 7e-13 AT2G36200 1381 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G068501 [exp] 251 / 1e-72 AT1G20060 393 / 3e-121 ATP binding microtubule motor family protein (.1) Potri.013G033900 [exp] 80 / 2e-15 AT5G27950 676 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.005G038900 [exp] 76 / 3e-14 AT3G63480 533 / 0.0 ATP binding microtubule motor family protein (.1.2) Potri.003G223800 [exp] 75 / 9e-14 AT1G55550 647 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.004G161100 [exp] 75 / 1e-13 AT4G39050 1411 / 0.0 Kinesin motor family protein (.1) Potri.016G060400 [exp] 75 / 1e-13 AT3G12020 1281 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Potri.006G194900 [exp] 75 / 1e-13 AT3G12020 1278 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Potri.009G122100 [exp] 75 / 1e-13 AT4G39050 1379 / 0.0 Kinesin motor family protein (.1) Potri.006G040700 [exp] 75 / 1e-13 AT3G10180 1336 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.006G210700 [exp] 74 / 2e-13 AT2G36200 1442 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [flax] [poplar] P-loop_NTPase PF00225 [flax] [poplar] Kinesin Kinesin motor domain
Representative CDS sequence Show only first row Show all	>Lus10034537 pacid=23162752 polypeptide=Lus10034537 locus=Lus10034537.g ID=Lus10034537.BGIv1.0 annot-version=v1.0 ATGAAAGATCCAACTCCCATTAACATGGAGGAACTCCTCCCGAATCCGCAGCCAGATCCGCCGTCCTCCGCCGCAGCCCAAGCTCCGGCACCTGATAGTC TGAAGGTCTTCCTCAGAATTAAGCTAGTTTCTGTCACGATATCTCCGCCGCGGTCGTTGGTCGAGTCGAAGAAGATCAAATCGGAGGTTTACGAAGGGTT TTCACATGTTTTCGCTCCTGATTCTTTGCAGAGTGAGGTTTACGACAAGATGGTGAAGCCGATGGTGGATGATTTTCTCCAAGGCAGAAATGGAATGCTA GCTGCGTTAGGGCCTAGTGGTTCAGGAAAGACTCATACTGTGTTTGGGACTCCGAGAGAGCCTGGAATGGTTCCTCTCGCGCTTCAACACATTTTCAAAC AGTCTAAGGGAAGTGATCGTAATTTGTCAAGGTCATTCTTTTTGTCAATCTTTGAAATATATTCAGAGAAAGGAAAAGGTGAACGAATATGTGATTTGAT TCCGGAAAGAGTTCAATCTGGCCTGCGCACGTCAGCTAAAGGGGTAATCATTCCTAATGCGTCAACGGCAGAATCCTTGATTGCTTGTGCAATGTTGACG CGTGCTACGAGCATGACAAACACAAACAGTCAGTCGAGCCGATCACAGTGTATAATTAATGTACGGATGCTTGTGGAGAAACAAGATGGGGAACTCAGTG GAAGCCGCCTAATCAAAGTCAATACAAAGATTGAGGTGCACGAGAATCTGGCTGATAATGATGCTGACGAGTCACAAGGTGTCTTGAAATCCAAGTCCGG TCGCAGTTCAAGGATGGCTGAAACTTTTTCCGAACAGATTCAACAAGATGTTGGTGTATTTCCTGAGATCAATGCAAACACTGGCTCAACCTGCGAAGTA GATGAATCCTGTAGCAGTGGGTCGGAATTTGACATCAACGTTGTAAAGGAGGAAGACCTTATAGAAGAACAAGTACAGAGTACTTCTGGGGAACTTGGAA ACGATACGGTGGATCCCGTTGACATCCAGTCAGCTGTGCATGGTGAGGAAAATGTTGATTTGCAACTAAGCCCTGCCTGTCACGATGAAAATGAGCAAAG TTCAGTCCAAGCAACGTCTTTTATTGAAGATCAAGTTCAAAGTACTTCCGGGGATCCTAGAAGCAATATGAAGGAATGCCTTAATCTTACAGAGGAGCTC CAGTCAGTTGTGCATGGCGAGGAACGCGATGATTTGCGACCAAGCCCAGCCCATTACGAGGGAAATGAGCAGAGTTCAGTCCAAGCAACTTCTGTCATTG AAGTTCAAGTTCAAAGTACTTCCGTTGACTCTAGAAACAGTAGGACGGGATCCTTTGATCTTACGGAGGAGCTCGTTGACATCCAGTCCGTTGTCCATGG AGAGGAACGCGTTGATTTGCAACCAAGCCCGGCCTGTTACGAGGAAAATGAGCAGAGTTCAGTCCAAGCAGCTTCTGTTATTGAAGATCAAGTTCGAAGT ACTTCCGGGGACCCTAGAAACAATAGGTTGGAATGCCTTCGTCTTACAGAGGAGCTCGTTGACATCCAGTCAGGTGTGCATGGCGAGGAACACGTTAATT TGCAACAAAGCCAAACCCTTTTCAAGGAAAATGAGAAGAGTTCAGTCCAAGCAACTACGGAGAGACATCAATCTGGCCGCTTAGAGAAGAGAAAAGAAAA GATGAACATCCTGTCGGTTTTCAGCAAGAACATTCCATTCCATTCTTCAGAGCATCCTACCAGAATCGCCGTAGGGTTCATCGGAACAATCTTGATTCCA AAATTGGTATTCAACAAAACAGTAAGCGAATGA
AA sequence Show only first row Show all	>Lus10034537 pacid=23162752 polypeptide=Lus10034537 locus=Lus10034537.g ID=Lus10034537.BGIv1.0 annot-version=v1.0 MKDPTPINMEELLPNPQPDPPSSAAAQAPAPDSLKVFLRIKLVSVTISPPRSLVESKKIKSEVYEGFSHVFAPDSLQSEVYDKMVKPMVDDFLQGRNGML AALGPSGSGKTHTVFGTPREPGMVPLALQHIFKQSKGSDRNLSRSFFLSIFEIYSEKGKGERICDLIPERVQSGLRTSAKGVIIPNASTAESLIACAMLT RATSMTNTNSQSSRSQCIINVRMLVEKQDGELSGSRLIKVNTKIEVHENLADNDADESQGVLKSKSGRSSRMAETFSEQIQQDVGVFPEINANTGSTCEV DESCSSGSEFDINVVKEEDLIEEQVQSTSGELGNDTVDPVDIQSAVHGEENVDLQLSPACHDENEQSSVQATSFIEDQVQSTSGDPRSNMKECLNLTEEL QSVVHGEERDDLRPSPAHYEGNEQSSVQATSVIEVQVQSTSVDSRNSRTGSFDLTEELVDIQSVVHGEERVDLQPSPACYEENEQSSVQAASVIEDQVRS TSGDPRNNRLECLRLTEELVDIQSGVHGEEHVNLQQSQTLFKENEKSSVQATTERHQSGRLEKRKEKMNILSVFSKNIPFHSSEHPTRIAVGFIGTILIP KLVFNKTVSE

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G20060			ATP binding microtubule motor ...		Lus10034537 [exp]	0	1
AT2G33340		MAC3B	MOS4-associated complex 3B (....		Lus10014477 [exp]	8.4	0.8359
AT3G19050		POK2	phragmoplast orienting kinesin...		Lus10018341 [exp]	8.8	0.9083
AT1G77600			ARM repeat superfamily protein...		Lus10018180 [exp]	11.4	0.9071
AT1G33410		NUP160, SAR1, A...	ARABIDOPSIS NUCLEOPORIN 160, S...		Lus10038728 [exp]	15.5	0.8963
AT5G05560		EMB2771, APC1	EMBRYO DEFECTIVE 2771, E3 ubiq...		Lus10028975 [exp]	15.9	0.8981
AT1G29370			Kinase-related protein of unkn...		Lus10004543 [exp]	20.1	0.8494
AT3G09080			Transducin/WD40 repeat-like su...		Lus10017180 [exp]	22.2	0.8681
AT4G03550		ATGSL5, PMR4, G...	POWDERY MILDEW RESISTANT 4, gl...		Lus10039828 [exp]	22.4	0.8353
AT5G23880		ATCPSF100, EMB1...	ENHANCED SILENCING PHENOTYPE 5...		Lus10021705 [exp]	22.6	0.8890
AT4G03550		ATGSL5, PMR4, G...	POWDERY MILDEW RESISTANT 4, gl...		Lus10000266 [exp]	25.5	0.8289

Compare expression of checked genes

Lus10034537 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.