Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G75860 56 / 1e-08 unknown protein AT2G17787 50 / 9e-07 unknown protein AT4G35940 47 / 2e-05 unknown protein AT1G20100 44 / 0.0001 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033130 [exp] 468 / 5e-166 AT1G75860 51 / 5e-07 unknown protein Lus10017274 [exp] 145 / 3e-40 AT2G17787 44 / 7e-05 unknown protein Lus10013567 [exp] 121 / 3e-31 AT2G17787 45 / 3e-05 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G019200 [exp] 87 / 3e-19 AT1G20100 71 / 6e-14 unknown protein Potri.005G242400 [exp] 64 / 3e-11 AT1G20100 51 / 3e-07 unknown protein Potri.009G134800 [exp] 43 / 0.0002 AT4G35940 / unknown protein Potri.005G242300 [exp] 42 / 0.0003 AT2G17787 / unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10034539 pacid=23162917 polypeptide=Lus10034539 locus=Lus10034539.g ID=Lus10034539.BGIv1.0 annot-version=v1.0 ATGGCTCGCTGCTTTCCTTATCCTCTTCCAGAAGGTTATTTGGGGGACGGAGCTTGTGGTGGTCGGTCTCTGTTGGGTCCGATTAAGGTTGGTTTCGAGC GAGAGCTTGGATCTTTGGATTCCATTCTTTTTTCTGTGCTCATCGATTTGATGCATGCGATGTCTCTTTGGTTAATCGATAACTTCTCTAACCTTACGAG AAAACTAGATTTGGTTTTGCAGAACAGCCAACTTCCCCATGCTGAAACGGAGAGAACAGGTCAGGGAAGAAAGGATACTGAAATATCTCTGAAAAGGAAG GGTAGTAGGGGACATGAGTCTGAAAAAACTCTATCCAAAAAGATTAAGTTCACCAAAAACAGCGGTGGTTCTGGGAAGGGTGTGGCTGAAGAAGCCGAAA GCAGTGGTGTGACTGAAGAACACGGTCAACCGTCCTGTGGTCAAAGCCCCTCCCACTCATCCGACTCTGTTAAGGGCACTGGCGATGAATGTCCCGCAAC TGCTGAAGTAAAGAAGTGCAAGAAGTTTCGAATTAAGTTGAATGTTTCAAAGCCTAAAGAGCCAGTCAGCAGTCAACAACCCTCCGTTCCATCAGCTAGT GTTTCCCAGCCAAAGGTTGTTAATCGTGTTGCTGATGTTGGTGTTTCTACTTCTGCTTCGGCTCTTACAAAGAAGAAAGGCGACGACAACATCCTCAGGG CAACACCAAAGGTTGTTGTTAATCGGGTTTCTATACCGGTTGTTGCGAAGAAGGAAGCAGGCATCATCCTCGGGGCACCACCGAAGGTGGTGGTTAATCG GGTTGCTGATGTCGGTGTTTCTACTTCTGCAAAGAAGGAAGAGGATATCAAGGTTGGGACAGCTGCGAGCCATATTTCACGAGATAAGACTAAGGAGAGG AAGTTGTCGAAAAGTGAAGTCTACAATTCCTTAACGAATGGTTGGACACCTCCTGCACTTCAGTTGTATCAAACAGAAGCTGAAGATCTTGATTGGCTTC TCCCTTCCAAGAAGCAGCCTGGCAGGGTCTGTGGCGGTGATGTTAGCAAGGAATCATGCAATGTCGGTGCTTGTGCAACATGGCCTAGAGCCCAGTACAT GCCCAGTGTCGACGTCTATGCATTGCCTTATACGATTCCATTCTGA
AA sequence Show only first row Show all	>Lus10034539 pacid=23162917 polypeptide=Lus10034539 locus=Lus10034539.g ID=Lus10034539.BGIv1.0 annot-version=v1.0 MARCFPYPLPEGYLGDGACGGRSLLGPIKVGFERELGSLDSILFSVLIDLMHAMSLWLIDNFSNLTRKLDLVLQNSQLPHAETERTGQGRKDTEISLKRK GSRGHESEKTLSKKIKFTKNSGGSGKGVAEEAESSGVTEEHGQPSCGQSPSHSSDSVKGTGDECPATAEVKKCKKFRIKLNVSKPKEPVSSQQPSVPSAS VSQPKVVNRVADVGVSTSASALTKKKGDDNILRATPKVVVNRVSIPVVAKKEAGIILGAPPKVVVNRVADVGVSTSAKKEEDIKVGTAASHISRDKTKER KLSKSEVYNSLTNGWTPPALQLYQTEAEDLDWLLPSKKQPGRVCGGDVSKESCNVGACATWPRAQYMPSVDVYALPYTIPF

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G75860			unknown protein		Lus10034539 [exp]	0	1
AT2G45760		BAL, BAP2	BON ASSOCIATION PROTEIN 1-LIKE...		Lus10009818 [exp]	2.2	0.9028
AT3G57120			Protein kinase superfamily pro...		Lus10027054 [exp]	3.2	0.9172
AT4G27280			Calcium-binding EF-hand family...		Lus10031588 [exp]	3.5	0.9223
AT4G37640		ACA2	calcium ATPase 2 (.1)		Lus10019300 [exp]	4.2	0.8647
AT3G56400	WRKY	ATWRKY70, WRKY7...	ARABIDOPSIS THALIANA WRKY DNA-...		Lus10029021 [exp]	6.0	0.9031
AT5G61210		SNP33, ATSNAP33...	soluble N-ethylmaleimide-sensi...		Lus10015738 [exp]	6.2	0.9111
AT1G05170			Galactosyltransferase family p...		Lus10002079 [exp]	6.5	0.8758
AT1G32250			Calcium-binding EF-hand family...		Lus10030986 [exp]	9.0	0.8825
AT1G75860			unknown protein		Lus10033130 [exp]	10.2	0.8930
AT4G38900	bZIP	AtbZIP29	Basic-leucine zipper (bZIP) tr...		Lus10012391 [exp]	10.5	0.8611

Compare expression of checked genes

Lus10034539 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.