Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G75900 456 / 2e-161 EXL3 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT1G75880 419 / 2e-146 EXL1 SGNH hydrolase-type esterase superfamily protein (.1.2) AT5G42170 418 / 3e-146 SGNH hydrolase-type esterase superfamily protein (.1) AT1G75890 413 / 2e-144 EXL2 GDSL-like Lipase/Acylhydrolase superfamily protein (.1.2) AT3G14820 400 / 2e-139 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT1G59406 394 / 4e-137 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT1G58725 394 / 4e-137 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT1G58520 374 / 1e-129 RXW8 lipases;hydrolases, acting on ester bonds (.1.2.3) AT1G20120 375 / 7e-129 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT1G59030 368 / 2e-127 GDSL-like Lipase/Acylhydrolase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10003717 [exp] 679 / 0 AT1G75900 458 / 3e-162 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10013572 [exp] 503 / 4e-180 AT1G75900 435 / 2e-153 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10017278 [exp] 422 / 2e-148 AT1G75900 376 / 5e-130 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10017279 [exp] 401 / 8e-140 AT3G14820 370 / 1e-127 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10034541 [exp] 401 / 1e-139 AT1G75880 379 / 7e-131 SGNH hydrolase-type esterase superfamily protein (.1.2) Lus10003719 [exp] 395 / 3e-137 AT1G75880 379 / 8e-131 SGNH hydrolase-type esterase superfamily protein (.1.2) Lus10013573 [exp] 391 / 5e-136 AT3G14820 367 / 2e-126 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10003720 [exp] 351 / 3e-120 AT5G42170 337 / 1e-114 SGNH hydrolase-type esterase superfamily protein (.1) Lus10026074 [exp] 347 / 2e-118 AT1G75900 339 / 3e-115 GDSL-like Lipase/Acylhydrolase superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G018800 [exp] 492 / 3e-175 AT1G75900 415 / 2e-144 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.005G242800 [exp] 484 / 1e-172 AT1G75900 419 / 6e-147 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.014G160200 [exp] 299 / 6e-100 AT2G42990 437 / 3e-154 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.002G219700 [exp] 298 / 4e-99 AT2G42990 439 / 1e-154 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.006G118300 [exp] 297 / 4e-99 AT5G03820 478 / 2e-170 GDSL-like Lipase/Acylhydrolase family protein (.1) Potri.009G151000 [exp] 290 / 2e-96 AT5G22810 504 / 0.0 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.005G205100 [exp] 289 / 2e-95 AT2G42990 492 / 2e-175 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.001G191400 [exp] 276 / 7e-91 AT3G16370 508 / 0.0 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.013G153000 [exp] 275 / 3e-90 AT2G30220 355 / 1e-121 GDSL-like Lipase/Acylhydrolase family protein (.1) Potri.004G051900 [exp] 273 / 1e-89 AT5G45950 430 / 3e-151 GDSL-like Lipase/Acylhydrolase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0264 [flax] [poplar] SGNH_hydrolase PF00657 [flax] [poplar] Lipase_GDSL GDSL-like Lipase/Acylhydrolase
Representative CDS sequence Show only first row Show all	>Lus10034540 pacid=23162704 polypeptide=Lus10034540 locus=Lus10034540.g ID=Lus10034540.BGIv1.0 annot-version=v1.0 ATGGCAGCTCTTGTGTTTCTGTGCGTCATTGTTGTCATAAACAATATTAGTACTAGTAATGCTGCGGCGAGGGTGAAGTTTCCCGCGAACGTCTCCGTTC CGGCAATCATCATATTCGGTGACTCAATCATGGACACGGGGAACAACAACAACCTTCCCACAGCTATAAAATGCAACTTCCCTCCCTACGGTGTCGATTT CAACGGCGGCAATCCCACTGGCCGATTTTGCGATGGCAAAATTCCTTCCGATATCATCGCTGAAGCTTTCGGAATCAAAAGCAGCGTTCCAGCATACTTG GACCCAAGTCTACAGCCCAATGACTTGCTAACCGGAGTCTCATTTGCTTCCGGAGGTGCTGGATTCGACCCTCTTACCGCCAAAATAGTGTCTGTTGTGA CATTGAGCCAACAACTCCAATACTTCCAAGAGTACGTCTCCAAGGTGAAAGCCATGGTTGGAGAAGAGAGGACCAATTTCATCATATCCAATGCCGTATT CTTCGTAGTTGCCGGTAGCGACGACATAGCCAACACTTACTTCCTCCTTCGAGCAAGGAGTCAGTACGATGTTCCCTCTTACACTGACCTCATGTCCGAT TCCGCATCTAGCTTTGTTCAGGAAATATATAAGCTTGGGGCAAGAAGGATTGGGGTGTTTAGTGCGCCGCCAATTGGGTGTGTACCATCACAAAGGACAA TAGGAGGAGGACTGGATAGAGAATGCGCTGAAGACAGAAACCAAGCAGCCATTCTTTTCAACTCTAAGCTTCAATCAAAATTGGCTTCTCTTGATCAAAC GTTACCCAATTCTAACGTCATCTACATTGATGTCTACACTTCCCTACTTGACCTCATCCACACCCCGCAAAAATACGGTTTCGAAGTGGCGGAGAAGGGC TGTTGCGGAACAGGAGCAATCGAGGTGGCTGTGCTGTGTAACAAGCTGACGCCGGTGACATGTCCCAACATTGGATCACATATATTTTGGGATAGCTACC ATCCTACTGAGAAGGCGTACAGGGTTATAACTACTCAGCTACTTGATCAATACACCACTGCTTTGGTTTCATAG
AA sequence Show only first row Show all	>Lus10034540 pacid=23162704 polypeptide=Lus10034540 locus=Lus10034540.g ID=Lus10034540.BGIv1.0 annot-version=v1.0 MAALVFLCVIVVINNISTSNAAARVKFPANVSVPAIIIFGDSIMDTGNNNNLPTAIKCNFPPYGVDFNGGNPTGRFCDGKIPSDIIAEAFGIKSSVPAYL DPSLQPNDLLTGVSFASGGAGFDPLTAKIVSVVTLSQQLQYFQEYVSKVKAMVGEERTNFIISNAVFFVVAGSDDIANTYFLLRARSQYDVPSYTDLMSD SASSFVQEIYKLGARRIGVFSAPPIGCVPSQRTIGGGLDRECAEDRNQAAILFNSKLQSKLASLDQTLPNSNVIYIDVYTSLLDLIHTPQKYGFEVAEKG CCGTGAIEVAVLCNKLTPVTCPNIGSHIFWDSYHPTEKAYRVITTQLLDQYTTALVS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G75900		EXL3	GDSL-like Lipase/Acylhydrolase...		Lus10034540 [exp]	0	1
AT3G29030		ATEXP5, ATHEXPA...	ARABIDOPSIS THALIANA EXPANSIN ...		Lus10033011 [exp]	1.0	0.9304
AT1G74160			unknown protein		Lus10021148 [exp]	2.0	0.9186
AT1G11600		CYP77B1	"cytochrome P450, family 77, s...		Lus10007658 [exp]	3.0	0.8945
AT1G24020		MLP423	MLP-like protein 423 (.1.2)		Lus10030840 [exp]	4.9	0.8857
					Lus10017791 [exp]	5.0	0.8830
AT3G11210			SGNH hydrolase-type esterase s...		Lus10028290 [exp]	5.8	0.8356
AT3G24140	bHLH	bHLH097, FMA	FAMA, basic helix-loop-helix (...		Lus10016680 [exp]	6.9	0.8508
AT1G72970		HTH, EDA17	HOTHEAD, embryo sac developmen...		Lus10037640 [exp]	7.7	0.8732
AT4G38840			SAUR-like auxin-responsive pro...		Lus10025911 [exp]	8.5	0.8593
AT2G20875		EPF1	epidermal patterning factor 1 ...		Lus10018576 [exp]	9.2	0.8657

Compare expression of checked genes

Lus10034540 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.