Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G75880 374 / 6e-129 EXL1 SGNH hydrolase-type esterase superfamily protein (.1.2) AT5G42170 370 / 3e-127 SGNH hydrolase-type esterase superfamily protein (.1) AT1G75890 365 / 4e-125 EXL2 GDSL-like Lipase/Acylhydrolase superfamily protein (.1.2) AT1G75900 363 / 8e-125 EXL3 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT3G14820 360 / 1e-123 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT1G59406 338 / 3e-115 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT1G58725 338 / 3e-115 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT1G20120 335 / 6e-113 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT1G20132 331 / 8e-112 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT1G59030 319 / 4e-108 GDSL-like Lipase/Acylhydrolase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10003719 [exp] 692 / 0 AT1G75880 379 / 8e-131 SGNH hydrolase-type esterase superfamily protein (.1.2) Lus10017279 [exp] 563 / 0 AT3G14820 370 / 1e-127 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10013573 [exp] 551 / 0 AT3G14820 367 / 2e-126 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10003717 [exp] 400 / 3e-139 AT1G75900 458 / 3e-162 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10034540 [exp] 400 / 4e-139 AT1G75900 456 / 2e-161 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10013572 [exp] 383 / 2e-132 AT1G75900 435 / 2e-153 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10003720 [exp] 330 / 7e-112 AT5G42170 337 / 1e-114 SGNH hydrolase-type esterase superfamily protein (.1) Lus10034542 [exp] 318 / 5e-107 AT1G75900 340 / 6e-116 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10026074 [exp] 312 / 2e-104 AT1G75900 339 / 3e-115 GDSL-like Lipase/Acylhydrolase superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G242800 [exp] 419 / 1e-146 AT1G75900 419 / 6e-147 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.002G018800 [exp] 407 / 3e-141 AT1G75900 415 / 2e-144 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.014G160200 [exp] 278 / 1e-91 AT2G42990 437 / 3e-154 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.002G219700 [exp] 278 / 6e-91 AT2G42990 439 / 1e-154 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.009G151000 [exp] 271 / 1e-88 AT5G22810 504 / 0.0 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.013G153000 [exp] 266 / 1e-86 AT2G30220 355 / 1e-121 GDSL-like Lipase/Acylhydrolase family protein (.1) Potri.005G205100 [exp] 266 / 2e-86 AT2G42990 492 / 2e-175 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.006G118300 [exp] 254 / 5e-82 AT5G03820 478 / 2e-170 GDSL-like Lipase/Acylhydrolase family protein (.1) Potri.011G062000 [exp] 254 / 5e-82 AT5G45960 440 / 8e-155 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.014G160100 [exp] 253 / 8e-82 AT2G04570 497 / 5e-178 GDSL-like Lipase/Acylhydrolase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0264 [flax] [poplar] SGNH_hydrolase PF00657 [flax] [poplar] Lipase_GDSL GDSL-like Lipase/Acylhydrolase
Representative CDS sequence Show only first row Show all	>Lus10034541 pacid=23162842 polypeptide=Lus10034541 locus=Lus10034541.g ID=Lus10034541.BGIv1.0 annot-version=v1.0 ATGGACAGGGCAATGATGTTGCCTTATTCATCATCAAATCTCTTCTTTTCGTTCACCATTCTTACTTTCCTTCTTTTCGCTGCCGGACCACCAACTACTT TTGCAGTGATCAAACTTCCCGCCGGCGAAGTTGTTCCTGCTGTTTTAGTGTTCGGAGATTCCATCGTCGATACAGGAAACAATAACGACCTGAATTCCCC TGCCAGGAGCAACTTCCCTCCCTACGGAAGGGATTTCAACGGCGGAATCCCCACCGGAAGATTCTCTAACGGGAAAGTTCCTTCGGATTTCCTAGTTGAA GAGCTCGGCATCAAAGACACTCTGCCGGCGTACAAGGATCCGAAGTTGAAGCCAGAGGATCTTCTTACGGGCGTTTGCTTCGCTTCCGGTGGTGTTGGTT ACGATGACTTGTCTTCGCAAACTGCGTCCGTTCCGCCATTGAGCGAGCAACTAAGGGAGTTTAAAGAGTACGTGAACCGAGTAAAAGCGATGATCGGAGA AGAAGGAACGACCAAGTTGTTGGCAAATAGCTTAGTTATAATAGTTCTTAGCAGCAACGACATAGCCAACACTTATTTTAATGCTCACTTGAGAGAGCTC CAGTATGACTTCCCTACCTATGCTGACATCCTCGTCAAAACTGCATCAACATTTGTTATGGATCTGTATACAATAGGGTGCCGGAGGATCGGGGTTTTTG GAGCGCCACCGCTAGGGTGTATTCCGTCTAGCAGGACGTTAGCAGGTGGGATCGAGAGACAGTGTAGCGAAAAGTATAACCAAGCGTCGCAATTGTTCAA TGCCAAGTTAGTAGTGGAATTGAATGCCATGAAGGCGAACTTGGACACTAATACTAGACTCGTCTACATAGATATCTACAGTCCTTTATTAGATCTCATC ATAAACTATCGATCGTACGGGTTCGAGATAGCAAACAAAGGATGTTGCGGGACGGGTAAGCTAGAGGCATCGGTACTATGCAACAAATACAACCCGTTTA CTTGTGCGGACGACTCCAAGTATTTGTTCTGGGATGGCTACCATCCATCTGAGAAGACTTACAGAATTTTGGTCAACCAGCTTCTGACCAAGTACGTTGG TAGCTTCATGTAG
AA sequence Show only first row Show all	>Lus10034541 pacid=23162842 polypeptide=Lus10034541 locus=Lus10034541.g ID=Lus10034541.BGIv1.0 annot-version=v1.0 MDRAMMLPYSSSNLFFSFTILTFLLFAAGPPTTFAVIKLPAGEVVPAVLVFGDSIVDTGNNNDLNSPARSNFPPYGRDFNGGIPTGRFSNGKVPSDFLVE ELGIKDTLPAYKDPKLKPEDLLTGVCFASGGVGYDDLSSQTASVPPLSEQLREFKEYVNRVKAMIGEEGTTKLLANSLVIIVLSSNDIANTYFNAHLREL QYDFPTYADILVKTASTFVMDLYTIGCRRIGVFGAPPLGCIPSSRTLAGGIERQCSEKYNQASQLFNAKLVVELNAMKANLDTNTRLVYIDIYSPLLDLI INYRSYGFEIANKGCCGTGKLEASVLCNKYNPFTCADDSKYLFWDGYHPSEKTYRILVNQLLTKYVGSFM

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G75880		EXL1	SGNH hydrolase-type esterase s...		Lus10034541 [exp]	0	1
AT4G23180		RLK4, CRK10	cysteine-rich RLK (RECEPTOR-li...		Lus10034971 [exp]	3.5	0.9783
AT2G48030			DNAse I-like superfamily prote...		Lus10027979 [exp]	11.7	0.9648
AT3G52720		CAH1, ATACA1, A...	A. THALIANA ALPHA CARBONIC ANH...		Lus10022710 [exp]	12.2	0.9809
AT5G04530		KCS19	3-ketoacyl-CoA synthase 19 (.1...		Lus10002191 [exp]	15.2	0.9704
AT5G53980	HD	ATHB52	homeobox protein 52 (.1)		Lus10013103 [exp]	16.5	0.9655
AT2G44350		CSY4, ATCS	CITRATE SYNTHASE 4, Citrate sy...		Lus10006943 [exp]	22.0	0.9763
AT3G22490			Seed maturation protein (.1)		Lus10019001 [exp]	24.1	0.8692
AT3G42880			Leucine-rich repeat protein ki...		Lus10037688 [exp]	25.5	0.9763
AT3G21720		ICL	isocitrate lyase (.1)		Lus10015122 [exp]	28.2	0.9753
AT1G63460		ATGPX8	glutathione peroxidase 8 (.1)		Lus10008534 [exp]	30.4	0.9324

Compare expression of checked genes

Lus10034541 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.