Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G75900 338 / 6e-115 EXL3 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT5G42170 335 / 7e-114 SGNH hydrolase-type esterase superfamily protein (.1) AT3G14820 320 / 4e-108 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT1G75890 301 / 2e-100 EXL2 GDSL-like Lipase/Acylhydrolase superfamily protein (.1.2) AT1G20132 294 / 2e-97 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT1G59406 292 / 2e-97 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT1G58725 292 / 2e-97 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT1G75880 288 / 2e-95 EXL1 SGNH hydrolase-type esterase superfamily protein (.1.2) AT1G20120 288 / 6e-95 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT1G58520 278 / 8e-92 RXW8 lipases;hydrolases, acting on ester bonds (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10003720 [exp] 637 / 0 AT5G42170 337 / 1e-114 SGNH hydrolase-type esterase superfamily protein (.1) Lus10026074 [exp] 577 / 0 AT1G75900 339 / 3e-115 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10003723 [exp] 363 / 5e-125 AT5G42170 308 / 1e-103 SGNH hydrolase-type esterase superfamily protein (.1) Lus10003722 [exp] 357 / 8e-123 AT5G42170 298 / 3e-99 SGNH hydrolase-type esterase superfamily protein (.1) Lus10003717 [exp] 353 / 1e-120 AT1G75900 458 / 3e-162 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10034540 [exp] 347 / 2e-118 AT1G75900 456 / 2e-161 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10013572 [exp] 340 / 7e-116 AT1G75900 435 / 2e-153 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10034541 [exp] 318 / 5e-107 AT1G75880 379 / 7e-131 SGNH hydrolase-type esterase superfamily protein (.1.2) Lus10017279 [exp] 315 / 5e-106 AT3G14820 370 / 1e-127 GDSL-like Lipase/Acylhydrolase superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G242800 [exp] 347 / 1e-118 AT1G75900 419 / 6e-147 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.002G018800 [exp] 344 / 7e-117 AT1G75900 415 / 2e-144 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.011G061900 [exp] 263 / 2e-85 AT5G45960 405 / 4e-141 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.011G062000 [exp] 262 / 5e-85 AT5G45960 440 / 8e-155 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.009G151000 [exp] 256 / 4e-83 AT5G22810 504 / 0.0 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.014G160100 [exp] 251 / 6e-81 AT2G04570 497 / 5e-178 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.001G191400 [exp] 250 / 7e-81 AT3G16370 508 / 0.0 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.014G160200 [exp] 249 / 3e-80 AT2G42990 437 / 3e-154 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.013G153000 [exp] 249 / 3e-80 AT2G30220 355 / 1e-121 GDSL-like Lipase/Acylhydrolase family protein (.1) Potri.002G219700 [exp] 249 / 7e-80 AT2G42990 439 / 1e-154 GDSL-like Lipase/Acylhydrolase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0264 [flax] [poplar] SGNH_hydrolase PF00657 [flax] [poplar] Lipase_GDSL GDSL-like Lipase/Acylhydrolase
Representative CDS sequence Show only first row Show all	>Lus10034542 pacid=23162742 polypeptide=Lus10034542 locus=Lus10034542.g ID=Lus10034542.BGIv1.0 annot-version=v1.0 ATGGCTTGCATATGGTCTTCAGGCATTCTAGTACCATTGCTTCTGCTGGCTGCTCTGTTTTTCCGGTCGGCTATTAGTGGAGTTCCAGCGATTTTCGTGT TCGGCGACTCCATTGTTGACACTGGAAACAATAATTACTTTACGACTTGGAGCAGGTGTAACTTTCCGCCGTATGGAAGGAATTTTTTCGGCGCAAAACC TACCGGGAGGTTTTCTGATGGGAAAATCATATCGGACCTCTTAGCTGAAAGTTTAGGAATCAAAAATCTTGTACCGCCTTTTCTTGATCCGAATATTGGA GTTAAAGATCTCCTAACAGGAGTGGCTTTTGCTTCTGGTGGTTGCGGCTTTGATCCTGAGACACCCAAATTAACGATGGCCTTATCGATTCCCGATCAGC TCAAACTCTTCCAAGAATACAAGGACAAGGTACGAGGATTTGTCGGAAATAACGAAACAAACAAGTTCGTTAATGACAGCCTCTATCTAATATCGTCAGG CAACAATGACATTGGGCTCACCTATTTCCTAAGCAACAGATGCCTTCAGTATGATATTGATTCATATGCTACGTTTCTTGTGATGCAAGCATCTGAATCT TTCAATGAGTTATACAAGTTGGGGGCTCGTAAGATTGGTGTGTTTAGCACGTTAGTATCAGGCTGTGTGCCTGAAGCAAGAACCCTTGCGGGAGGGAAGC AAAGACAGTGTGCTGAGAATTTCAATGAATTAGCAAAGTTATACAACAAGAAGCTGATCAACGAGATAGATTACTTGGGGAAAAAACTTCCTGATGCCAA ATTAGTGTTTGTGAACCTGTTCACCCCTTTGCTTAACATTATAGAAGATCCTTCAAAATATGGGTTTGTTGTAGAGAAAGATGGGTGCTGCGATACTGGG AAAATAGAGGCTGCAGTTCTTTGCAACGAATTAATGAGCCCTCTAACATGTACCAATGCTTCACAGTATATTTTTTGGGATAGTGTTCATCCCACAGAAA AAACTTATAAAATCTTGGTCTCGCAGATAAAGGAATACATACAAAAGCTGCTTCTCTGA
AA sequence Show only first row Show all	>Lus10034542 pacid=23162742 polypeptide=Lus10034542 locus=Lus10034542.g ID=Lus10034542.BGIv1.0 annot-version=v1.0 MACIWSSGILVPLLLLAALFFRSAISGVPAIFVFGDSIVDTGNNNYFTTWSRCNFPPYGRNFFGAKPTGRFSDGKIISDLLAESLGIKNLVPPFLDPNIG VKDLLTGVAFASGGCGFDPETPKLTMALSIPDQLKLFQEYKDKVRGFVGNNETNKFVNDSLYLISSGNNDIGLTYFLSNRCLQYDIDSYATFLVMQASES FNELYKLGARKIGVFSTLVSGCVPEARTLAGGKQRQCAENFNELAKLYNKKLINEIDYLGKKLPDAKLVFVNLFTPLLNIIEDPSKYGFVVEKDGCCDTG KIEAAVLCNELMSPLTCTNASQYIFWDSVHPTEKTYKILVSQIKEYIQKLLL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G75900		EXL3	GDSL-like Lipase/Acylhydrolase...		Lus10034542 [exp]	0	1
AT4G14660		NRPE7	RNA polymerase Rpb7-like, N-te...		Lus10024251 [exp]	5.1	0.6745
AT5G05960			Bifunctional inhibitor/lipid-t...		Lus10000397 [exp]	14.6	0.6878
AT3G48180			unknown protein		Lus10030823 [exp]	22.1	0.6322
AT3G52360			unknown protein		Lus10016198 [exp]	38.0	0.6131
AT4G38430		ATROPGEF1, ROPG...	rho guanyl-nucleotide exchange...		Lus10005644 [exp]	58.2	0.5769
AT5G03100			F-box/RNI-like superfamily pro...		Lus10029952 [exp]	67.7	0.5425
AT1G52540			Protein kinase superfamily pro...		Lus10001323 [exp]	78.7	0.5349
AT5G60440	MADS	AGL62	AGAMOUS-like 62 (.1)		Lus10020511 [exp]	80.9	0.5271
					Lus10021381 [exp]	81.1	0.5378
AT1G47710			Serine protease inhibitor (SER...		Lus10040926 [exp]	95.7	0.5202

Compare expression of checked genes

Lus10034542 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.