Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G20135 249 / 2e-79 GDSL-like Lipase/Acylhydrolase family protein (.1) AT1G23500 249 / 4e-79 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT1G73610 246 / 3e-78 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT5G42170 244 / 8e-77 SGNH hydrolase-type esterase superfamily protein (.1) AT1G58725 239 / 2e-75 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT1G59406 239 / 2e-75 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT1G20120 240 / 4e-75 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT1G75900 235 / 1e-73 EXL3 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT1G75880 233 / 1e-72 EXL1 SGNH hydrolase-type esterase superfamily protein (.1.2) AT5G63170 231 / 2e-72 GDSL-like Lipase/Acylhydrolase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10003717 [exp] 249 / 7e-79 AT1G75900 458 / 3e-162 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10034540 [exp] 243 / 2e-76 AT1G75900 456 / 2e-161 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10013573 [exp] 241 / 9e-76 AT3G14820 367 / 2e-126 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10013572 [exp] 238 / 7e-75 AT1G75900 435 / 2e-153 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10003720 [exp] 238 / 7e-75 AT5G42170 337 / 1e-114 SGNH hydrolase-type esterase superfamily protein (.1) Lus10026074 [exp] 236 / 9e-74 AT1G75900 339 / 3e-115 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10017279 [exp] 234 / 3e-73 AT3G14820 370 / 1e-127 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10034542 [exp] 230 / 9e-72 AT1G75900 340 / 6e-116 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10034541 [exp] 228 / 1e-70 AT1G75880 379 / 7e-131 SGNH hydrolase-type esterase superfamily protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G018800 [exp] 247 / 9e-78 AT1G75900 415 / 2e-144 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.005G242800 [exp] 235 / 1e-73 AT1G75900 419 / 6e-147 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.013G153000 [exp] 214 / 1e-65 AT2G30220 355 / 1e-121 GDSL-like Lipase/Acylhydrolase family protein (.1) Potri.014G160100 [exp] 202 / 3e-61 AT2G04570 497 / 5e-178 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.002G219700 [exp] 203 / 4e-61 AT2G42990 439 / 1e-154 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.001G191400 [exp] 198 / 1e-59 AT3G16370 508 / 0.0 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.005G205100 [exp] 194 / 1e-57 AT2G42990 492 / 2e-175 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.009G151000 [exp] 192 / 3e-57 AT5G22810 504 / 0.0 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.014G160200 [exp] 190 / 2e-56 AT2G42990 437 / 3e-154 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.006G118300 [exp] 185 / 1e-54 AT5G03820 478 / 2e-170 GDSL-like Lipase/Acylhydrolase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0264 [flax] [poplar] SGNH_hydrolase PF00657 [flax] [poplar] Lipase_GDSL GDSL-like Lipase/Acylhydrolase
Representative CDS sequence Show only first row Show all	>Lus10034543 pacid=23162729 polypeptide=Lus10034543 locus=Lus10034543.g ID=Lus10034543.BGIv1.0 annot-version=v1.0 ATGAGAGGTGGGTGGTGTTGCCCGGATGGTCGCCGGTGGCGGGGTTGGGAAACGGCAGAGTTGCGGTGGCGTTTAGCGATGCGAGGGCGCTGCCGTGGAG GGTTTGGGCTACTCTTTTGCAGTGACCATTCTTACATGGCTGTAAGCAGCAGTATTGAAGGAGCCTTCCATTGGGATCCACCTGTTGATGTATCTCGTTC GCTCGTACTGATGTCGTCGTTGACCTCCTCGTGTTTTGGCCAACAACAAAACCAGCCAATATCAGCCGTTTTTGCATTTGGCGATTCGATCCTTGACACC GGCAACAATAACAACCTGATCTCCAAGTGCAACTACCCACCTTATGGCAAAGATTTCGTTGGAGGCAGAGCGACTGGACGATGGGGGAATGGCAGAGTGT TGTCTGATATTTTCGCCGAGGGGTTGGGAGTGAAAAAATATTTGCCAGCATATCTATACCAAAATCTCTCAACCCAAGAGCTTATGACAGGAGTGTGTTT CGCATCGGGTGGGTCCGGCCTCGACACCTTAACATCTACGGCCAATCAAGCCATACCAATGGCCCAACAATTCACCAACTTTCAGAATTACCTCGTCAAA CTCAAAGGACTTGTCGGAGAAGATAAGGCAAACGCAATTATATCTAACTCTATAGTTTTGATTTCTGCCGGCAACAACGACATGGCTGCGGGATTTACCG CCGGTGGGGCTGGGATGGGGATTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGTGCG TGGCGCGTTCCCCGCCGGTGGGGCTGTAATGGGTATTGAGGGATACACCAACCATCTTGCCGCATTGGCCACCAACTTTGTTAATCAATTGTACGGAATG GGAGTGAGGAGAGTAGGGTTCGTAAGCGCAATTCCAGGAGGGTGCACTCCTATGGGAAGACTGGCCTCGGGTGGAGTCGGATGTTACGGGGCGAACCCGT TGGACGGAGCCAGCGTATATAACGCCAAGATATCAAACGCAATGCAAGATCTTAACTCCAAACTAGCCAACTCTAAAATATTCTACATTGATATATACAC TCCATTGCTAAGTATCTCCCAGAATCCCTCTGCATATGGATTCCAAGTTTCAATGACAGGGTGCTGTCAACTAATGGGTCCGCTTTGTGCAATAGGTGAC TTAATAACGTGCCCAGACAGTAGCAAGTTTGTGTTTTGGGATGGTGTTCATCCAAGCGAGGCTGCTTACAAGGCTGTTGCTCAGATTCTCCATAAGAATA ATGCCAATCAACTATTTTGA
AA sequence Show only first row Show all	>Lus10034543 pacid=23162729 polypeptide=Lus10034543 locus=Lus10034543.g ID=Lus10034543.BGIv1.0 annot-version=v1.0 MRGGWCCPDGRRWRGWETAELRWRLAMRGRCRGGFGLLFCSDHSYMAVSSSIEGAFHWDPPVDVSRSLVLMSSLTSSCFGQQQNQPISAVFAFGDSILDT GNNNNLISKCNYPPYGKDFVGGRATGRWGNGRVLSDIFAEGLGVKKYLPAYLYQNLSTQELMTGVCFASGGSGLDTLTSTANQAIPMAQQFTNFQNYLVK LKGLVGEDKANAIISNSIVLISAGNNDMAAGFTAGGAGMGIXXXXXXXXXXXXXXXXXXXXXXXXVRGAFPAGGAVMGIEGYTNHLAALATNFVNQLYGM GVRRVGFVSAIPGGCTPMGRLASGGVGCYGANPLDGASVYNAKISNAMQDLNSKLANSKIFYIDIYTPLLSISQNPSAYGFQVSMTGCCQLMGPLCAIGD LITCPDSSKFVFWDGVHPSEAAYKAVAQILHKNNANQLF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G42170			SGNH hydrolase-type esterase s...		Lus10034543 [exp]	0	1

Compare expression of checked genes

Lus10034543 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.