Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G20160 832 / 0 ATSBT5.2 Subtilisin-like serine endopeptidase family protein (.1.2) AT1G20150 700 / 0 Subtilisin-like serine endopeptidase family protein (.1) AT2G04160 491 / 5e-163 AIR3 AUXIN-INDUCED IN ROOT CULTURES 3, Subtilisin-like serine endopeptidase family protein (.1) AT5G67360 482 / 9e-160 ARA12 Subtilase family protein (.1) AT5G59100 477 / 4e-158 Subtilisin-like serine endopeptidase family protein (.1) AT5G59090 468 / 1e-154 ATSBT4.12 subtilase 4.12 (.1.2.3) AT3G46850 466 / 5e-154 Subtilase family protein (.1) AT5G59120 466 / 6e-154 ATSBT4.13 subtilase 4.13 (.1) AT5G59130 452 / 2e-148 Subtilase family protein (.1.2) AT5G58840 446 / 2e-146 Subtilase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023048 [exp] 488 / 9e-162 AT5G59810 762 / 0.0 Subtilase family protein (.1) Lus10038774 [exp] 481 / 4e-159 AT5G59810 839 / 0.0 Subtilase family protein (.1) Lus10016482 [exp] 479 / 7e-159 AT3G46850 709 / 0.0 Subtilase family protein (.1) Lus10038772 [exp] 478 / 3e-158 AT5G59810 815 / 0.0 Subtilase family protein (.1) Lus10014591 [exp] 478 / 3e-154 AT2G04160 716 / 0.0 AUXIN-INDUCED IN ROOT CULTURES 3, Subtilisin-like serine endopeptidase family protein (.1) Lus10039087 [exp] 468 / 3e-154 AT2G04160 810 / 0.0 AUXIN-INDUCED IN ROOT CULTURES 3, Subtilisin-like serine endopeptidase family protein (.1) Lus10040750 [exp] 467 / 5e-154 AT5G59120 714 / 0.0 subtilase 4.13 (.1) Lus10016064 [exp] 466 / 8e-153 AT2G04160 975 / 0.0 AUXIN-INDUCED IN ROOT CULTURES 3, Subtilisin-like serine endopeptidase family protein (.1) Lus10006505 [exp] 463 / 3e-152 AT2G04160 745 / 0.0 AUXIN-INDUCED IN ROOT CULTURES 3, Subtilisin-like serine endopeptidase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G018600 [exp] 900 / 0 AT1G20160 889 / 0.0 Subtilisin-like serine endopeptidase family protein (.1.2) Potri.005G243000 [exp] 891 / 0 AT1G20160 874 / 0.0 Subtilisin-like serine endopeptidase family protein (.1.2) Potri.003G189200 [exp] 559 / 0 AT1G20160 583 / 0.0 Subtilisin-like serine endopeptidase family protein (.1.2) Potri.011G050000 [exp] 484 / 2e-160 AT2G04160 806 / 0.0 AUXIN-INDUCED IN ROOT CULTURES 3, Subtilisin-like serine endopeptidase family protein (.1) Potri.007G102100 [exp] 481 / 2e-159 AT2G04160 817 / 0.0 AUXIN-INDUCED IN ROOT CULTURES 3, Subtilisin-like serine endopeptidase family protein (.1) Potri.011G050300 [exp] 481 / 2e-159 AT2G04160 786 / 0.0 AUXIN-INDUCED IN ROOT CULTURES 3, Subtilisin-like serine endopeptidase family protein (.1) Potri.009G144500 [exp] 478 / 2e-158 AT5G59810 508 / 9e-170 Subtilase family protein (.1) Potri.011G050100 [exp] 477 / 7e-158 AT2G04160 784 / 0.0 AUXIN-INDUCED IN ROOT CULTURES 3, Subtilisin-like serine endopeptidase family protein (.1) Potri.007G102250 [exp] 473 / 4e-156 AT2G04160 821 / 0.0 AUXIN-INDUCED IN ROOT CULTURES 3, Subtilisin-like serine endopeptidase family protein (.1) Potri.010G196800 [exp] 470 / 1e-155 AT5G59100 599 / 0.0 Subtilisin-like serine endopeptidase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0570 [flax] [poplar] PPP-I PF05922 [flax] [poplar] Inhibitor_I9 Peptidase inhibitor I9 CL0570 [flax] [poplar] PF00082 [flax] [poplar] Peptidase_S8 Subtilase family CL0364 [flax] [poplar] Leu-IlvD PF02225 [flax] [poplar] PA PA domain
Representative CDS sequence Show only first row Show all	>Lus10034544 pacid=23162822 polypeptide=Lus10034544 locus=Lus10034544.g ID=Lus10034544.BGIv1.0 annot-version=v1.0 ATGACGACCACCACTTCCATTCTCATATCTTCTTCACTCTTCGCCCTGCTACTGCTTCTGCTTTCGTCGGAAAAAGTGAGAGCAACCGATGAAGATGTTT ACATCGTCTACATGGGAGCCAAGTCCGCACAAAATGGGGCCTCCACACATCACTATAACCAGCTTCTTACCTCTGTCTCTAAACTGAGAAAGGGGGCTCT GGTTCGGACCTACAAGCACCGGATCTCTGGGTTCGCTGCCCGTTTAACGTCGGTAGAGGCTCGATCGATTGTCAACCAACCCGGAGTTGTCTCGGTTATT CGCGACACTTATTATCAACTCCATACTACACGTTCTTGGGAGTTCCTCAAGTATGAGACCGGTGTTGAGATTTATTCGGCTCCTGGTCCTTCCCAAACAT CACCCTCTCTTGGATCAGATATTGTCATTGGCATCATTGATACTGGAATTTGGCCGGAATCTAAGAGTTTTGAAGGCAATACTATGAACGGGAAACTATC CGGCTGGAATGGAACTTGTATGACTACAACTGATTTTAACTCAACTAGCTGCAATGGGAAAATCGTGGGAGCCAGATTTTACCACGACCCGGAAGACGAC GATGACGACGACTACCTGACCCCAAGGGATTTTGTCGGCCACGGCACCCATGTAGCGTCAACCGTAGCGGGGGTAGAAGTTGAAAACGCGTCGTTTTACG GACTTGCGGCCGGCACGGCCAAAGGCGGATCCCCAGGATCGAGGATCGCTGTGTACAGAGTCTGCACACCGGCTGGTTGCCGGAGCTCCAGCATATTGGC GGCGTTCGACGACGCGATCGCCGACGGCGTCAACGTTATTTCGGTGTCCCTGGGTGCATCTTCGTTTTCGATGCCGGATTTTAAGGACGACACCATCTCA ATCGGAGCTTTCCACGCTGTCCAGAGCGGGATCACGGTGGTCTGTTCTGCTGGGAATGACGGGCCTGACTCCTCCACGGTCGTCAACGGAGCGCCGTGGA TTTTGACCGTTGCCGCCACTACTATTGACAGAGATTTCGAGTCTGACGTTGTTTTGGGTGGGGGTAAAATTGTCAAGGGTGAAGCAATAAACTTCTCGAA ACTTCAGAAATCTCCAGTGTATCCGTTGATGTATGGCATCACAGCTAAGAAATCTGGTGCTTCCGAATTAGATGCGAGGAACTGCGTTCCAGGCTCAATC GACAAGGCCAAAGTAAACGGGACCATTGTCCTGTGTGACAACAAAGATCCAGACTACTCCATTTCGGACAAAGAGGAAGCAGTCCGGAGCCAGGGCGGAG TAGGCGTAATCCTCGTAAATGACGTGACAAGGAGAGTTGCTTCTCTTTTCAAGAGCTTCCCAGCTGTTGTTGTCAGTTCAAAAGAAGCTGCTGAAATCGT CTCTTACATCAACTCAACCAAAAACCCAGTAGCCACGATTTTACCAACTGTAGCGGCACCAAAGTACAAGCCGGCACCTGAGATTGCATACTTCTCAGCC AGAGGCCCTTCATTGAATTCAGCGAACATCATCAAGGCATTAACAACTACACCGGGAGTCAACATACTAGCTGCATGGATGGGCAACGATTTATCTGAGA CGCCCGACGGCAAAGACCCACCTCTCTATAACGTCCTCTCCGGAACTTCTATGTCCTGTCCACACGTTTCAGGAATTGCTGCTGTTGTCAAGTCGCATAA CCCTTCTTTTGGTCCTTCCCACATCAAATCTGCCATCATGACAACAGCATCAGACTTGAACAACGACAAATCACCAATAACAACACATTTAGGCGCAGTG GCCACAGCCTACGATTACGGTGCAGGAGAAATCAGCCTGACCGCACCTCTACAGCCAGGGTTGATCTACGAGACTACAACCGTCGACTACCTCAACTTCC TCTGCTACCATGGATACAACACAACCACTCTCAAACTTATAGCCACATCCATCCCCGCCGGCTTCGCTTGCCCAAAGGACTCCAGTCCAGATCTCATCTC CAACATCAACTATCCCTCTATTTCCGTCAAGATGAGTGGAAAACAGAGCAAGAAAATAAGCAGGACATTGACAAACGTTGCTGGGGACGGCGACTCGACC TACACATTCGACACAACCATGGGGGGAAAAGGTGTATCTGTACAAGTTTATCCATCACAGCTTCAGTTCACAAAGAACGGGCAGAAGCTGACTTACGACG TGACTTTCTCTACCACTGGCTCCTCTCCTAAGGGGGATGTGTTCGGAGCAATTACATGGAGTAGCTCCAAGTTCAAAGTCAGGACTCCATTTGTTGTAGC CAGCTGA
AA sequence Show only first row Show all	>Lus10034544 pacid=23162822 polypeptide=Lus10034544 locus=Lus10034544.g ID=Lus10034544.BGIv1.0 annot-version=v1.0 MTTTTSILISSSLFALLLLLLSSEKVRATDEDVYIVYMGAKSAQNGASTHHYNQLLTSVSKLRKGALVRTYKHRISGFAARLTSVEARSIVNQPGVVSVI RDTYYQLHTTRSWEFLKYETGVEIYSAPGPSQTSPSLGSDIVIGIIDTGIWPESKSFEGNTMNGKLSGWNGTCMTTTDFNSTSCNGKIVGARFYHDPEDD DDDDYLTPRDFVGHGTHVASTVAGVEVENASFYGLAAGTAKGGSPGSRIAVYRVCTPAGCRSSSILAAFDDAIADGVNVISVSLGASSFSMPDFKDDTIS IGAFHAVQSGITVVCSAGNDGPDSSTVVNGAPWILTVAATTIDRDFESDVVLGGGKIVKGEAINFSKLQKSPVYPLMYGITAKKSGASELDARNCVPGSI DKAKVNGTIVLCDNKDPDYSISDKEEAVRSQGGVGVILVNDVTRRVASLFKSFPAVVVSSKEAAEIVSYINSTKNPVATILPTVAAPKYKPAPEIAYFSA RGPSLNSANIIKALTTTPGVNILAAWMGNDLSETPDGKDPPLYNVLSGTSMSCPHVSGIAAVVKSHNPSFGPSHIKSAIMTTASDLNNDKSPITTHLGAV ATAYDYGAGEISLTAPLQPGLIYETTTVDYLNFLCYHGYNTTTLKLIATSIPAGFACPKDSSPDLISNINYPSISVKMSGKQSKKISRTLTNVAGDGDST YTFDTTMGGKGVSVQVYPSQLQFTKNGQKLTYDVTFSTTGSSPKGDVFGAITWSSSKFKVRTPFVVAS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G20160		ATSBT5.2	Subtilisin-like serine endopep...		Lus10034544 [exp]	0	1
AT1G53708		RTFL9	ROTUNDIFOLIA like 9 (.1)		Lus10041259 [exp]	1.0	0.8363
AT5G25110		CIPK25, SnRK3.2...	SNF1-RELATED PROTEIN KINASE 3....		Lus10024448 [exp]	4.9	0.8029
AT2G32510		MAPKKK17	mitogen-activated protein kina...		Lus10035284 [exp]	5.7	0.8186
AT2G19570		DESZ, AT-CDA1, ...	cytidine deaminase 1 (.1)		Lus10018355 [exp]	7.7	0.8207
AT5G18930		BUD2, SAMDC4	BUSHY AND DWARF 2, Adenosylmet...		Lus10021951 [exp]	7.7	0.7441
AT2G19570		DESZ, AT-CDA1, ...	cytidine deaminase 1 (.1)		Lus10007654 [exp]	12.0	0.8119
					Lus10035642 [exp]	12.7	0.8252
AT2G20230			Tetraspanin family protein (.1...		Lus10022841 [exp]	13.2	0.8069
AT4G14430		PEC12, IBR10, E...	DELTA\(3\), DELTA\(2\)-ENOYL C...		Lus10022199 [exp]	19.3	0.8036
AT1G07890		ATAPX01, CS1, A...	maternal effect embryo arrest ...		Lus10015970 [exp]	21.7	0.7859

Compare expression of checked genes

Lus10034544 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.