Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G42180 468 / 2e-167 PER64 peroxidase 64, Peroxidase superfamily protein (.1) AT5G51890 348 / 4e-120 Peroxidase superfamily protein (.1) AT4G33420 276 / 1e-91 Peroxidase superfamily protein (.1) AT1G05260 266 / 9e-88 RCI3A, RCI3 RARE COLD INDUCIBLE GENE 3, Peroxidase superfamily protein (.1) AT3G21770 259 / 3e-85 Peroxidase superfamily protein (.1) AT5G64120 252 / 3e-82 Peroxidase superfamily protein (.1) AT1G71695 249 / 1e-80 Peroxidase superfamily protein (.1) AT1G05250 247 / 2e-80 Peroxidase superfamily protein (.1) AT1G05240 247 / 2e-80 Peroxidase superfamily protein (.1) AT2G18980 247 / 2e-80 Peroxidase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005614 [exp] 549 / 0 AT5G42180 461 / 6e-165 peroxidase 64, Peroxidase superfamily protein (.1) Lus10017288 [exp] 548 / 0 AT5G42180 462 / 4e-165 peroxidase 64, Peroxidase superfamily protein (.1) Lus10031664 [exp] 339 / 2e-116 AT5G51890 453 / 1e-161 Peroxidase superfamily protein (.1) Lus10027405 [exp] 332 / 8e-114 AT5G51890 448 / 2e-159 Peroxidase superfamily protein (.1) Lus10029543 [exp] 273 / 2e-90 AT4G33420 479 / 1e-171 Peroxidase superfamily protein (.1) Lus10018374 [exp] 265 / 2e-87 AT3G01190 414 / 4e-146 Peroxidase superfamily protein (.1) Lus10007638 [exp] 258 / 1e-84 AT3G01190 407 / 4e-143 Peroxidase superfamily protein (.1) Lus10028736 [exp] 256 / 4e-84 AT1G05260 266 / 4e-88 RARE COLD INDUCIBLE GENE 3, Peroxidase superfamily protein (.1) Lus10032926 [exp] 256 / 5e-84 AT1G05260 292 / 5e-98 RARE COLD INDUCIBLE GENE 3, Peroxidase superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G018000 [exp] 507 / 0 AT5G42180 483 / 1e-173 peroxidase 64, Peroxidase superfamily protein (.1) Potri.005G108900 [exp] 451 / 1e-160 AT5G42180 442 / 2e-157 peroxidase 64, Peroxidase superfamily protein (.1) Potri.018G136900 [exp] 286 / 1e-95 AT4G33420 451 / 1e-160 Peroxidase superfamily protein (.1) Potri.007G122351 [exp] 282 / 5e-94 AT5G15180 396 / 9e-139 Peroxidase superfamily protein (.1) Potri.007G122401 [exp] 282 / 5e-94 AT5G15180 396 / 9e-139 Peroxidase superfamily protein (.1) Potri.007G122250 [exp] 282 / 5e-94 AT5G15180 396 / 9e-139 Peroxidase superfamily protein (.1) Potri.007G122301 [exp] 282 / 5e-94 AT5G15180 396 / 9e-139 Peroxidase superfamily protein (.1) Potri.T045500 [exp] 281 / 7e-94 AT4G33420 441 / 9e-157 Peroxidase superfamily protein (.1) Potri.007G122200 [exp] 279 / 6e-93 AT5G15180 395 / 2e-138 Peroxidase superfamily protein (.1) Potri.007G122451 [exp] 278 / 2e-92 AT5G15180 374 / 3e-130 Peroxidase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0617 [flax] [poplar] Peroxidase PF00141 [flax] [poplar] peroxidase Peroxidase
Representative CDS sequence Show only first row Show all	>Lus10034547 pacid=23162824 polypeptide=Lus10034547 locus=Lus10034547.g ID=Lus10034547.BGIv1.0 annot-version=v1.0 ATGAGTACTACTGGTCCAGTTCGAGCCTTCCTTCTAATTATCTTCACAACAATCTTCTTCTCCTCTGTCAATTCCCTTAGCCTCAACTACTACGACAAAA CCTGCCCTAACCTTGAATCAGCAGTCACCAATGCCGTCAAGAAAGCCATGTCAAACGACAGAACCGTCCCTGCTGCCCTGCTCCGAATGCACTTCCACGA CTGTTTCATTCGGGGTTGTGATGGCTCGGTGCTGTTGAAGTCAACCAAAAATAATGTGGCAGAGAAAGATGGGCCACCAAACATTTCACTCCATGCGTTT TATGTTATTGACCATGCCAAGGAAGCTGTTGAAAAACTGTGCCCTGGTATCGTCTCTTGTGCTGATATTCTGGCTCTCGCTGCTAGGGATGCCGTTGCTT TGTCTGGAGGTCCAAACTGGGTAGTCCCAAAAGGCCGAAAAGACGGACGAATCTCCAAGGCTATCGAGACTAGACAATTACCGGCTCCAGTCTTCAACAT CTCTCAACTCCAGCAAAGCTTCTCACAGAGAGGTCTTTCCACGAAAGACCTTGTTGCACTTTCAGGAGGGCACACTCTAGGATTTGCACATTGTTCCTCG TTCCAGAACAGGATCCACAGTTTCAATGCTAGCCTAGATGTCGACTCCACCCTATCCCCATCTTTTGCGGCGAGCTTGAGGAAAGTTTGCCCGCGTAGGA ACAAGGTTAAGAATGCTGGGTCGACTTTGGATTCCACGACTTTTGGGTTCGACAATGTTTATTACAAAATGCTGCTCAGTGGGAAGAGCATTTTCTCGTC GGACCAGGCTCTGTTGACGAACCCAAAGACGAGATCTTTGGTTTCGAAGTTTGCTGCAAGCGAGAAGGCATTTGAGGATGCGTTTGTGAAATCCATGATT AAGATGAGTAGTATCACTGGTGGGCAGGAGATTCGGCTTGATTGTAAGGTCGTGAGGTGA
AA sequence Show only first row Show all	>Lus10034547 pacid=23162824 polypeptide=Lus10034547 locus=Lus10034547.g ID=Lus10034547.BGIv1.0 annot-version=v1.0 MSTTGPVRAFLLIIFTTIFFSSVNSLSLNYYDKTCPNLESAVTNAVKKAMSNDRTVPAALLRMHFHDCFIRGCDGSVLLKSTKNNVAEKDGPPNISLHAF YVIDHAKEAVEKLCPGIVSCADILALAARDAVALSGGPNWVVPKGRKDGRISKAIETRQLPAPVFNISQLQQSFSQRGLSTKDLVALSGGHTLGFAHCSS FQNRIHSFNASLDVDSTLSPSFAASLRKVCPRRNKVKNAGSTLDSTTFGFDNVYYKMLLSGKSIFSSDQALLTNPKTRSLVSKFAASEKAFEDAFVKSMI KMSSITGGQEIRLDCKVVR

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G42180		PER64	peroxidase 64, Peroxidase supe...		Lus10034547 [exp]	0	1
AT3G24570			Peroxisomal membrane 22 kDa (M...		Lus10022130 [exp]	1.0	0.9577
AT5G08100		ASPGA1	asparaginase A1, N-terminal nu...		Lus10034668 [exp]	2.2	0.9402
AT4G28890			RING/U-box superfamily protein...		Lus10011702 [exp]	3.5	0.9341
AT1G32910			HXXXD-type acyl-transferase fa...		Lus10034786 [exp]	3.5	0.9447
AT1G32910			HXXXD-type acyl-transferase fa...		Lus10033327 [exp]	4.0	0.9419
AT2G18150			Peroxidase superfamily protein...		Lus10028337 [exp]	5.5	0.9490
AT5G14340	MYB	AtMYB40	myb domain protein 40 (.1)		Lus10032117 [exp]	8.8	0.9217
AT1G11655			unknown protein		Lus10001141 [exp]	10.2	0.9105
AT4G25050		ACP4	acyl carrier protein 4 (.1.2)		Lus10018986 [exp]	10.4	0.9232
AT3G29635			HXXXD-type acyl-transferase fa...		Lus10021388 [exp]	11.8	0.8896

Compare expression of checked genes

Lus10034547 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.