Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G20190 366 / 2e-129 ATHEXPALPHA1.14, ATEXP11, ATEXPA11 EXPANSIN 11, expansin 11 (.1) AT4G01630 316 / 2e-109 ATEXP17, ATHEXPALPHA1.13, ATEXPA17 EXPANSIN 17, expansin A17 (.1) AT1G69530 301 / 2e-103 ATHEXPALPHA1.2, AT-EXP1, ATEXP1, ATEXPA1, EXP1 EXPANSIN 1, expansin A1 (.1.2.3.4.5) AT2G37640 298 / 2e-102 ATHEXPALPHA1.9, ATEXP3, ATEXPA3, EXP3 ARABIDOPSIS THALIANA EXPANSIN A3, EXPANSIN 3, Barwin-like endoglucanases superfamily protein (.1) AT2G39700 294 / 6e-101 ATHEXPALPHA1.6, ATEXP4, ATEXPA4 expansin A4 (.1) AT2G40610 292 / 4e-100 ATHEXPALPHA1.11, ATEXP8, ATEXPA8 expansin A8 (.1) AT2G03090 291 / 8e-100 ATHEXPALPHA1.3, ATEXP15, ATEXPA15 EXPANSIN 15, expansin A15 (.1) AT5G02260 290 / 3e-99 ATHEXPALPHA1.10, ATEXP9, ATEXPA9 expansin A9 (.1) AT3G55500 288 / 1e-98 ATHEXPALPHA1.7, ATEXP16, ATEXPA16 EXPANSIN 16, expansin A16 (.1) AT5G05290 288 / 2e-98 ATHEXPALPHA1.12, ATEXP2, ATEXPA2 EXPANSIN 2, expansin A2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021845 [exp] 454 / 4e-164 AT1G20190 397 / 1e-141 EXPANSIN 11, expansin 11 (.1) Lus10017256 [exp] 387 / 2e-137 AT1G20190 378 / 5e-134 EXPANSIN 11, expansin 11 (.1) Lus10007205 [exp] 309 / 1e-106 AT4G01630 400 / 2e-142 EXPANSIN 17, expansin A17 (.1) Lus10009253 [exp] 307 / 9e-106 AT4G01630 405 / 1e-144 EXPANSIN 17, expansin A17 (.1) Lus10038013 [exp] 305 / 3e-105 AT4G01630 405 / 1e-144 EXPANSIN 17, expansin A17 (.1) Lus10034227 [exp] 299 / 8e-103 AT2G40610 416 / 7e-149 expansin A8 (.1) Lus10016533 [exp] 296 / 2e-101 AT2G39700 456 / 9e-165 expansin A4 (.1) Lus10040801 [exp] 296 / 2e-101 AT2G39700 456 / 1e-164 expansin A4 (.1) Lus10037164 [exp] 292 / 7e-100 AT1G69530 420 / 2e-150 EXPANSIN 1, expansin A1 (.1.2.3.4.5)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G244100 [exp] 404 / 4e-144 AT1G20190 404 / 3e-144 EXPANSIN 11, expansin 11 (.1) Potri.002G017900 [exp] 399 / 2e-142 AT1G20190 408 / 9e-146 EXPANSIN 11, expansin 11 (.1) Potri.002G184700 [exp] 318 / 2e-110 AT4G01630 394 / 4e-140 EXPANSIN 17, expansin A17 (.1) Potri.016G135200 [exp] 311 / 8e-108 AT2G40610 400 / 6e-143 expansin A8 (.1) Potri.006G108000 [exp] 310 / 2e-107 AT2G40610 379 / 2e-134 expansin A8 (.1) Potri.019G057500 [exp] 307 / 6e-106 AT2G40610 374 / 2e-132 expansin A8 (.1) Potri.001G001100 [exp] 298 / 1e-102 AT2G03090 375 / 5e-133 EXPANSIN 15, expansin A15 (.1) Potri.001G240900 [exp] 295 / 6e-101 AT2G39700 449 / 6e-162 expansin A4 (.1) Potri.010G167200 [exp] 292 / 5e-100 AT1G69530 335 / 1e-116 EXPANSIN 1, expansin A1 (.1.2.3.4.5) Potri.006G086100 [exp] 290 / 3e-99 AT2G37640 435 / 2e-156 ARABIDOPSIS THALIANA EXPANSIN A3, EXPANSIN 3, Barwin-like endoglucanases superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0159 [flax] [poplar] E-set PF01357 [flax] [poplar] Expansin_C Expansin C-terminal domain CL0199 [flax] [poplar] DPBB PF03330 [flax] [poplar] DPBB_1 Lytic transglycolase
Representative CDS sequence Show only first row Show all	>Lus10034548 pacid=23162784 polypeptide=Lus10034548 locus=Lus10034548.g ID=Lus10034548.BGIv1.0 annot-version=v1.0 ATGGCTTTACCATTACTACTACTCTCCTTGTTCTTTCTCACTCCCAGTAATGTTGTCACCGCATTTGCTCCTTCTGCTTGGACCAAAGGCCACGCCACTT TCTATGGCGGCAGTGACGCTTCCGGAACCATGGGTGGGGCTTGCGGGTATGGTAACTTGTACTCGACTGGGTACGGGACACGAACGGCTGCGTTGAGCAC TGCTCTGTTCAATGACGGGGCATCTTGCGGGGAGTGTTACAAGATCATCTGTGACTTCAAAACGGATCCTAGGTGGTGCATTAGGGGCAAGTCCATCAAG ATCACTGCGACGAATTTCTGTCCTCCGAATTTTGCTCAGCCGAACGACGATGGAGGATGGTGCAACCCGCCCTTGAAGCACTTTGACATGGCTCAGCCAG CCTGGGAGAAGATTGGTATCTACAGAGGCGGAATCATTCCTGTCCTGTACCAGAGGGTGCCATGTAAGAAGCACGGTGGAGTTAGGTTCACAATCAACGG AAGAGACTACTTTGAGTTGGTGATGATTAGCAATGTCGGTGGAGCTGGATCTATTAAATCGGTATCGATCAAGGGTTCGAAGACAGGGTGGTTGACCATG TCGAGAAATTGGGGATCGAATTGGCAGTCGAATTCGTACCTCGATGGTCAGTCTCTGTCGTTCCAAGTGACAACCACTGACGGGGAAATGAGAACTTTCA ACAACATTGCGCCGGCTAACTGGAGATTTGGGCAAACTTTCTCTAGTCGAGTACAGTTCTGA
AA sequence Show only first row Show all	>Lus10034548 pacid=23162784 polypeptide=Lus10034548 locus=Lus10034548.g ID=Lus10034548.BGIv1.0 annot-version=v1.0 MALPLLLLSLFFLTPSNVVTAFAPSAWTKGHATFYGGSDASGTMGGACGYGNLYSTGYGTRTAALSTALFNDGASCGECYKIICDFKTDPRWCIRGKSIK ITATNFCPPNFAQPNDDGGWCNPPLKHFDMAQPAWEKIGIYRGGIIPVLYQRVPCKKHGGVRFTINGRDYFELVMISNVGGAGSIKSVSIKGSKTGWLTM SRNWGSNWQSNSYLDGQSLSFQVTTTDGEMRTFNNIAPANWRFGQTFSSRVQF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G20190		ATHEXPALPHA1.14...	EXPANSIN 11, expansin 11 (.1)		Lus10034548 [exp]	0	1
AT5G20110			Dynein light chain type 1 fami...		Lus10014484 [exp]	1.0	0.9782
AT1G06980			unknown protein		Lus10042244 [exp]	2.0	0.9707
AT3G54770			RNA-binding (RRM/RBD/RNP motif...		Lus10041423 [exp]	2.4	0.9701
AT1G75030		ATLP-3	thaumatin-like protein 3 (.1)		Lus10032726 [exp]	2.8	0.9700
AT4G12730		FLA2	FASCICLIN-like arabinogalactan...		Lus10001178 [exp]	4.5	0.9674
AT5G10720		CKI2, AHK5	CYTOKININ INDEPENDENT 2, histi...		Lus10020115 [exp]	4.9	0.9627
AT4G12300		CYP706A4	"cytochrome P450, family 706, ...		Lus10004331 [exp]	4.9	0.9584
AT5G62620			Galactosyltransferase family p...		Lus10042164 [exp]	6.0	0.9448
					Lus10024121 [exp]	6.9	0.9514
AT4G30320			CAP (Cysteine-rich secretory p...		Lus10001319 [exp]	7.4	0.9533

Compare expression of checked genes

Lus10034548 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.