Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G76010 223 / 2e-70 Alba DNA/RNA-binding protein (.1) AT1G20220 205 / 6e-64 Alba DNA/RNA-binding protein (.1) AT3G07030 152 / 9e-43 Alba DNA/RNA-binding protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021844 [exp] 417 / 2e-146 AT1G76010 280 / 1e-92 Alba DNA/RNA-binding protein (.1) Lus10005615 [exp] 271 / 2e-90 AT1G76010 264 / 3e-87 Alba DNA/RNA-binding protein (.1) Lus10017255 [exp] 269 / 1e-89 AT1G76010 251 / 2e-82 Alba DNA/RNA-binding protein (.1) Lus10022807 [exp] 152 / 1e-42 AT3G07030 241 / 4e-76 Alba DNA/RNA-binding protein (.1) Lus10011874 [exp] 152 / 1e-41 AT3G07030 239 / 2e-73 Alba DNA/RNA-binding protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G017600 [exp] 260 / 1e-85 AT1G76010 216 / 3e-68 Alba DNA/RNA-binding protein (.1) Potri.005G244300 [exp] 251 / 8e-83 AT1G76010 221 / 7e-71 Alba DNA/RNA-binding protein (.1) Potri.002G066100 [exp] 217 / 1e-68 AT1G20220 200 / 1e-62 Alba DNA/RNA-binding protein (.1) Potri.005G194600 [exp] 211 / 9e-67 AT1G20220 194 / 6e-61 Alba DNA/RNA-binding protein (.1) Potri.002G240601 [exp] 145 / 5e-41 AT3G07030 199 / 3e-61 Alba DNA/RNA-binding protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0441 [flax] [poplar] AlbA PF01918 [flax] [poplar] Alba Alba
Representative CDS sequence Show only first row Show all	>Lus10034549 pacid=23162845 polypeptide=Lus10034549 locus=Lus10034549.g ID=Lus10034549.BGIv1.0 annot-version=v1.0 ATGGATCGTTACCAGAGAGTTGAGAAGCCGAGGGCTGAAACTCCTATCGATGAGAACGAGATTCGAATTACCAGCCAGGGGAGGATGCGCAATTACATCT CCTACGCCATGACCCTGCTTCAAGAGAAGGGTGCAGATGAAATTGTATTCAAGGCAATGGGTAGAGCCATTAACAAGACTGTGACCATTGTGGAGCTTAT CAAGAGGAGGATTGTTGGTCTTCATCAAGTGACATCAATTGGGTCTACAGATATCACGGATACATGGGAACCCCTAGAGGAAGGCCTCCTGCCTTTGGAA ACTACAAGGCATGTATCAATGATTACAGTGGTTCTCTCTAAGAAAGAATTGGATACATCTTCCGTTGGGTATCAGCCCCCTTTATCAGAAGACCAAGTGA AAGCCTCCACAGATTATGAATATGAAGGAGAGGGATCCCCAAATGGCCGAGGCAGGGGTCGTGGTGGCAGAGGCCGGGCACGTGGGGGCAGAGTTAAAGG ATATGTATCCGTTGATCATGAAGATGGAGGGCTTGATGGCCCAGGCTATGCCAGGGGTAGAGGTCGTGGTAGAGGACGTGGTTTCCGCGGCCGTGGTAGG GGAGGTTACAATGGTCCTCCTGCTGATGGAGAGCAAGATGGAGGTTACAATTATGATGCTCCTCGACAGGGTGGCCGTGGTAGGAGAGGAGGTTATAATG GTCCTCCTGCTGATGCAGAGCAAGATGGAGGCTACAACTATGATGCTCCTCGCCGGAGTGGTCGTGGTAGGAGGGGAGGTTATAATGGTCCTGCTGATGC ACAGCAAGATGGAGGCTACAGTTACGAACCTCGTCCACAGGGCACTGGCGGTAGGCGAGGAGGCTATAATGGTCCTCCTGCTGATGCACAGCAAGATGGT GACTACAATTACGATGCTCCACCACAACCCCGTGGGCGTGGCCGTGGAAGAGGCGGGTATCGCGGTGGCGGAAGAGGCCGTGGTGGTGGTAGATCAAATG GACCTATCCAGGCAGCTGCATGA
AA sequence Show only first row Show all	>Lus10034549 pacid=23162845 polypeptide=Lus10034549 locus=Lus10034549.g ID=Lus10034549.BGIv1.0 annot-version=v1.0 MDRYQRVEKPRAETPIDENEIRITSQGRMRNYISYAMTLLQEKGADEIVFKAMGRAINKTVTIVELIKRRIVGLHQVTSIGSTDITDTWEPLEEGLLPLE TTRHVSMITVVLSKKELDTSSVGYQPPLSEDQVKASTDYEYEGEGSPNGRGRGRGGRGRARGGRVKGYVSVDHEDGGLDGPGYARGRGRGRGRGFRGRGR GGYNGPPADGEQDGGYNYDAPRQGGRGRRGGYNGPPADAEQDGGYNYDAPRRSGRGRRGGYNGPADAQQDGGYSYEPRPQGTGGRRGGYNGPPADAQQDG DYNYDAPPQPRGRGRGRGGYRGGGRGRGGGRSNGPIQAAA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G76010			Alba DNA/RNA-binding protein (...		Lus10034549 [exp]	0	1
AT5G66860			Ribosomal protein L25/Gln-tRNA...		Lus10009338 [exp]	4.7	0.9543
AT3G53740			Ribosomal protein L36e family ...		Lus10024402 [exp]	5.7	0.9561
AT4G09320		NDPK1	Nucleoside diphosphate kinase ...		Lus10024286 [exp]	7.3	0.9423
AT1G09590			Translation protein SH3-like f...		Lus10017232 [exp]	8.9	0.9500
AT3G11940		AML1, ATRPS5A	ARABIDOPSIS MINUTE-LIKE 1, rib...		Lus10008436 [exp]	9.8	0.9517
AT4G39200			Ribosomal protein S25 family p...		Lus10023552 [exp]	10.4	0.9410
AT2G32060			Ribosomal protein L7Ae/L30e/S1...		Lus10027800 [exp]	10.7	0.9466
AT4G16450			unknown protein		Lus10039057 [exp]	11.5	0.9224
AT3G05130			unknown protein		Lus10000927 [exp]	11.8	0.9382
AT3G17465		RPL3P	ribosomal protein L3 plastid (...		Lus10017709 [exp]	13.4	0.9456

Compare expression of checked genes

Lus10034549 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.