Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G42200 113 / 7e-33 RING/U-box superfamily protein (.1) AT1G53820 72 / 4e-16 RING/U-box superfamily protein (.1) AT4G40070 72 / 5e-16 RING/U-box superfamily protein (.1) AT3G16720 71 / 2e-15 ATL2 TOXICOS EN LEVADURA 2 (.1) AT1G72310 69 / 5e-15 ATL3 RING/U-box superfamily protein (.1) AT2G42350 68 / 6e-15 RING/U-box superfamily protein (.1) AT4G09120 68 / 2e-14 RING/U-box superfamily protein (.1) AT4G35480 67 / 2e-14 RHA3B RING-H2 finger A3B (.1) AT2G20030 67 / 3e-14 RING/U-box superfamily protein (.1) AT2G35000 67 / 4e-14 ATL9 Arabidopsis toxicos en levadura 9, RING/U-box superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021842 [exp] 232 / 1e-80 AT5G42200 103 / 3e-29 RING/U-box superfamily protein (.1) Lus10017253 [exp] 161 / 2e-52 AT5G42200 126 / 4e-38 RING/U-box superfamily protein (.1) Lus10005617 [exp] 160 / 2e-52 AT5G42200 108 / 6e-31 RING/U-box superfamily protein (.1) Lus10022743 [exp] 72 / 1e-16 AT3G10910 154 / 5e-48 RING/U-box superfamily protein (.1) Lus10021197 [exp] 71 / 2e-15 AT1G04360 268 / 2e-87 RING/U-box superfamily protein (.1) Lus10041134 [exp] 71 / 2e-15 AT1G72200 182 / 3e-54 RING/U-box superfamily protein (.1) Lus10029178 [exp] 71 / 3e-15 AT5G40250 297 / 1e-98 RING/U-box superfamily protein (.1) Lus10036466 [exp] 71 / 3e-15 AT1G72200 186 / 6e-55 RING/U-box superfamily protein (.1) Lus10006493 [exp] 70 / 3e-15 AT3G16720 221 / 5e-71 TOXICOS EN LEVADURA 2 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G244500 [exp] 146 / 6e-46 AT5G42200 149 / 3e-46 RING/U-box superfamily protein (.1) Potri.002G017400 [exp] 143 / 9e-45 AT5G42200 154 / 2e-48 RING/U-box superfamily protein (.1) Potri.010G010500 [exp] 71 / 1e-15 AT3G16720 202 / 1e-63 TOXICOS EN LEVADURA 2 (.1) Potri.005G036800 [exp] 71 / 2e-15 AT3G05200 261 / 7e-84 RING/U-box superfamily protein (.1) Potri.005G255200 [exp] 67 / 7e-15 AT1G76410 163 / 2e-51 RING/U-box superfamily protein (.1) Potri.013G025800 [exp] 69 / 1e-14 AT3G05200 261 / 9e-84 RING/U-box superfamily protein (.1) Potri.003G073300 [exp] 68 / 1e-14 AT1G53820 157 / 2e-46 RING/U-box superfamily protein (.1) Potri.002G101800 [exp] 68 / 2e-14 AT1G72220 195 / 3e-58 RING/U-box superfamily protein (.1) Potri.007G111900 [exp] 68 / 2e-14 AT4G33565 163 / 1e-46 RING/U-box superfamily protein (.1) Potri.019G130100 [exp] 66 / 2e-14 AT5G05280 129 / 5e-38 RING/U-box superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0229 [flax] [poplar] RING PF00097 [flax] [poplar] zf-C3HC4 Zinc finger, C3HC4 type (RING finger)
Representative CDS sequence Show only first row Show all	>Lus10034551 pacid=23162768 polypeptide=Lus10034551 locus=Lus10034551.g ID=Lus10034551.BGIv1.0 annot-version=v1.0 ATGAGTGCTCTGTTCGTCGTCTACATTTGCCTCCTCTGGTTCTCTACCAATCCCCCAATCAATCCCGTCGTCGTCGGAAGAGAAGACTTGAAGCCGGTAT CGAAGAAGGGGCTTTCGGCGGCGGAGCTTGAGAAGCTTCCCAAGGTAACCGGGAAGGATCTCTCGATGGGAAACGAATGTGCGGTTTGCCTGGACGAGAT CGAGGAGGAACAAACGGCGAGGCGGATTCCGGTCTGTAACCACGGATTTCACGTGGAATGCGCTGATAAGTGGTTGTCGAATAACCCGTTTTGCCCGGTG TGCCGGGGCAAAATCGACCGAGATCGGCTGAAGAATCCCGGTGGTTACGAAGACAGTCCGTGCTAA
AA sequence Show only first row Show all	>Lus10034551 pacid=23162768 polypeptide=Lus10034551 locus=Lus10034551.g ID=Lus10034551.BGIv1.0 annot-version=v1.0 MSALFVVYICLLWFSTNPPINPVVVGREDLKPVSKKGLSAAELEKLPKVTGKDLSMGNECAVCLDEIEEEQTARRIPVCNHGFHVECADKWLSNNPFCPV CRGKIDRDRLKNPGGYEDSPC

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G42200			RING/U-box superfamily protein...		Lus10034551 [exp]	0	1
AT4G34120		CBSX2, CDCP1, L...	LOSS OF THE TIMING OF ET AND J...		Lus10002834 [exp]	2.6	0.8819
AT4G37680		HHP4	heptahelical protein 4 (.1.2)		Lus10011713 [exp]	8.7	0.8564
AT3G07490		AtCML3, AGD11	calmodulin-like 3, ARF-GAP dom...		Lus10009564 [exp]	9.2	0.8512
AT3G10150		ATPAP16, PAP16	purple acid phosphatase 16 (.1...		Lus10031039 [exp]	10.1	0.8230
AT4G29080	AUX_IAA	IAA27, PAP2	indole-3-acetic acid inducible...		Lus10034962 [exp]	12.5	0.8489
AT4G22730			Leucine-rich repeat protein ki...		Lus10004333 [exp]	13.5	0.8446
AT3G60580	C2H2ZnF		C2H2-like zinc finger protein ...		Lus10004724 [exp]	14.1	0.8413
					Lus10026077 [exp]	15.1	0.7846
AT2G43060	bHLH	AtIBH1, bHLH158	ILI1 binding bHLH 1 (.1)		Lus10025511 [exp]	16.4	0.8476
AT5G42660			Protein of unknown function (D...		Lus10024684 [exp]	17.3	0.8315

Compare expression of checked genes

Lus10034551 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.